View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_low_1 (Length: 501)

Name: NF11755_low_1
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_low_1
NF11755_low_1
[»] chr4 (9 HSPs)
chr4 (10-386)||(19655218-19655598)
chr4 (28-89)||(9132093-9132154)
chr4 (45-93)||(12701839-12701887)
chr4 (459-495)||(19655059-19655095)
chr4 (329-372)||(34360883-34360926)
chr4 (28-93)||(2321821-2321886)
chr4 (28-89)||(33632839-33632900)
chr4 (38-90)||(38380306-38380358)
chr4 (329-372)||(34650874-34650917)
[»] chr3 (6 HSPs)
chr3 (28-89)||(16973044-16973105)
chr3 (25-93)||(22101335-22101403)
chr3 (28-93)||(22176282-22176347)
chr3 (31-93)||(55048224-55048286)
chr3 (329-380)||(3383565-3383616)
chr3 (332-372)||(49366272-49366312)
[»] chr7 (3 HSPs)
chr7 (28-93)||(32651918-32651983)
chr7 (32-90)||(1470882-1470941)
chr7 (41-90)||(21708262-21708311)
[»] chr1 (8 HSPs)
chr1 (38-93)||(23926095-23926150)
chr1 (28-93)||(5851732-5851797)
chr1 (27-93)||(43842403-43842469)
chr1 (45-93)||(34900139-34900187)
chr1 (41-93)||(38595459-38595511)
chr1 (52-93)||(45093671-45093712)
chr1 (45-89)||(34058615-34058659)
chr1 (45-93)||(43810887-43810934)
[»] chr8 (6 HSPs)
chr8 (36-93)||(1098783-1098840)
chr8 (28-93)||(35063710-35063775)
chr8 (38-93)||(5493247-5493302)
chr8 (329-371)||(7643751-7643793)
chr8 (45-91)||(14847650-14847696)
chr8 (28-66)||(34422843-34422881)
[»] chr5 (4 HSPs)
chr5 (45-86)||(7277735-7277776)
chr5 (28-93)||(10161331-10161396)
chr5 (45-93)||(23245205-23245253)
chr5 (31-93)||(33584490-33584552)
[»] chr2 (2 HSPs)
chr2 (45-93)||(32006508-32006556)
chr2 (329-390)||(34353257-34353318)
[»] scaffold0031 (1 HSPs)
scaffold0031 (48-93)||(78657-78702)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 19655598 - 19655218
Alignment:
Q  10 ttgaaaccaaatacaccatataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaannnnnnnnnnngtt-- 107  Q
    ||||||||||||| |  |||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||| |||            ||      
T  19655598 ttgaaaccaaatata--atataagtgtcttgaaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgtttttaatacaaatatttctttttttat 19655501  T
Q  108 -tccttaactaatgctccggggtgctagttaacaacactcaaaagaaaatacttaatattatgagaaaaagagagatatatat--ttgcgaaattcgaga 204  Q
     |||||||||||||| |  ||   |||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||||  || |||||||| |||    
T  19655500 ttccttaactaatgccctaggacactagttaacaacacccaaaaaaaaatacttaatattacgagaaaaagagagagatatatctttacgaaattcaaga 19655401  T
Q  205 ataaaactgccaccaccaataatggtttcataattttctttagggttatgttaatcggtgtccttagagcaatagttaagaaaaccnnnnnnngaaagtt 304  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||||||        |||||||    
T  19655400 ataaaactgctaccaccaataatggtttcataattttctttagggttatcctaaccggtgtcattagagcaatagttaagaaaactaaaacaagaaagtt 19655301  T
Q  305 ttaatttgaaaataacca--ttttcagaggagttgaatgcacaaatttcaatacgaaattactatatttgtttacttattcatt 386  Q
    |||| |||||||| ||||  |||| |||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||    
T  19655300 ttaagttgaaaat-accatttttttagaggagttgaatgcacaaattccaatacaaaattattatatttgtttccttattcatt 19655218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 9132093 - 9132154
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaat 89  Q
    ||||||| ||||| ||||||||||||||||||||||||| |||||| ||| |||||||||||    
T  9132093 tataagtatcttgaaatttgtgtagtcaaagtttaaaaagtgtaaaaaatgatgttttcaat 9132154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 12701887 - 12701839
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  12701887 ttgtatagtcaaagtttaaaaagtgtaaagaatgatgttttcaatgcaa 12701839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 495
Target Start/End: Complemental strand, 19655095 - 19655059
Alignment:
Q  459 atcacatggtggaaaataagacaacccgttctatctc 495  Q
    |||||||||||||||||||||||||||||||||||||    
T  19655095 atcacatggtggaaaataagacaacccgttctatctc 19655059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 34360926 - 34360883
Alignment:
Q  329 gaggagttgaatgcacaaatttcaatacgaaattactatatttg 372  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  34360926 gaggagttgaatgcacaagtttcaatacgagattactatatttg 34360883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 2321821 - 2321886
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    ||||||| |||||||| |||||| || |||||||||||| ||||||  || |||||||||||||||    
T  2321821 tataagtatcttggaacttgtgtggtgaaagtttaaaaagtgtaaaagatgatgttttcaatgcaa 2321886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 33632839 - 33632900
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaat 89  Q
    |||||||  |||| |||||||| |||||||||||||||| |||||||||| || ||||||||    
T  33632839 tataagtaccttgaaatttgtgcagtcaaagtttaaaaagtgtaaagaatgatattttcaat 33632900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 38380306 - 38380358
Alignment:
Q  38 ttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatg 90  Q
    |||||||||||||||||||| | |||||| |||||||||| ||||||| ||||    
T  38380306 ttggaatttgtgtagtcaaaatataaaaagtgtaaagaataatgtttttaatg 38380358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 34650874 - 34650917
Alignment:
Q  329 gaggagttgaatgcacaaatttcaatacgaaattactatatttg 372  Q
    ||||||||||||||||||||| |||| | |||||||||||||||    
T  34650874 gaggagttgaatgcacaaattccaatgcaaaattactatatttg 34650917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 16973105 - 16973044
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaat 89  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  16973105 tataagtatcttggaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgttttcaat 16973044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 22101335 - 22101403
Alignment:
Q  25 ccatataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    ||||||||||  ||||||| |||||||||||||||||||||| | |||||||| ||| |||||||||||    
T  22101335 ccatataagtaccttggaacttgtgtagtcaaagtttaaaaagtataaagaatgatgctttcaatgcaa 22101403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 22176282 - 22176347
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||  ||||||| |||||||||||||||||||||| | |||| ||| |||||||||||||||    
T  22176282 tataagtaccttggaacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaa 22176347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 55048224 - 55048286
Alignment:
Q  31 aagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||| |||||||||||||||||||||||||| |||| | |||| | | |||||||||||||||    
T  55048224 aagtatcttggaatttgtgtagtcaaagttttaaaagtataaaaattaatgttttcaatgcaa 55048286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 3383616 - 3383565
Alignment:
Q  329 gaggagttgaatgcacaaatttcaatacgaaattactatatttgtttactta 380  Q
    |||||||||||||||||| || |||||||| |||| ||||||||||| ||||    
T  3383616 gaggagttgaatgcacaagttccaatacgagattattatatttgttttctta 3383565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 49366312 - 49366272
Alignment:
Q  332 gagttgaatgcacaaatttcaatacgaaattactatatttg 372  Q
    ||||||||||||||||||||||| ||  |||||||||||||    
T  49366312 gagttgaatgcacaaatttcaatgcgggattactatatttg 49366272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 32651983 - 32651918
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    ||||||||||||| || |||||||||||||||||||||| | |||| ||| |||||||||||||||    
T  32651983 tataagtgtcttgaaacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaa 32651918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 1470882 - 1470941
Alignment:
Q  32 agtgtcttggaatttgtgtagtcaaagtttaaaaaa-tgtaaagaattatgttttcaatg 90  Q
    |||||||| ||| ||||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  1470882 agtgtcttagaacttgtgtagtcaaaatttaaaaaagtgtaaaaaatgatgttttcaatg 1470941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 21708311 - 21708262
Alignment:
Q  41 gaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatg 90  Q
    |||||||| || ||||||||||| || |||||||||| ||||||||||||    
T  21708311 gaatttgtataatcaaagtttaagaagtgtaaagaatgatgttttcaatg 21708262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 23926095 - 23926150
Alignment:
Q  38 ttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||| |||||||||||||||||||||| |||||||||| || ||||||||||||    
T  23926095 ttggaacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaa 23926150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 5851732 - 5851797
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    ||||||| | || ||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  5851732 tataagtattttagaacttgtgcagtcaaagtttaaaaaatgaaaagaatgatgttttcaatgcaa 5851797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 43842403 - 43842469
Alignment:
Q  27 atataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||| |||||||| |||| || |||||||||||||| || |||||||  ||||||||||||||    
T  43842403 atataagtatcttggaacttgtatactcaaagtttaaaaagtgaaaagaatggtgttttcaatgcaa 43842469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 34900187 - 34900139
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||||||||||||||||| | |||||||| ||||| |||||||||    
T  34900187 ttgtgtagtcaaagtttaaaaagtataaagaatgatgttctcaatgcaa 34900139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 38595459 - 38595511
Alignment:
Q  41 gaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||| ||||||||||||||||| |||||| ||| ||||||| |||||||    
T  38595459 gaatttgtatagtcaaagtttaaaaagtgtaaataatgatgtttttaatgcaa 38595511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 45093712 - 45093671
Alignment:
Q  52 gtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    ||||||||| ||||| |||||| |||||||||||||||||||    
T  45093712 gtcaaagttaaaaaagtgtaaaaaattatgttttcaatgcaa 45093671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 34058615 - 34058659
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaat 89  Q
    ||||||| |||||||| |||||||||||| |||||| ||||||||    
T  34058615 ttgtgtaatcaaagttaaaaaaatgtaaaaaattatattttcaat 34058659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 43810934 - 43810887
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    ||||||||||||||||||||||||||| | ||  |||||||||||||||    
T  43810934 ttgtgtagtcaaagtttaaaaaatgtata-aaagatgttttcaatgcaa 43810887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 1098840 - 1098783
Alignment:
Q  36 tcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||| |||||| ||||||||||||||||||| |||||| || ||||||||||||||||    
T  1098840 tcttagaatttatgtagtcaaagtttaaaaagtgtaaaaaaatatgttttcaatgcaa 1098783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 35063710 - 35063775
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||  ||||||| ||||||||||||||||| |||| |||||||||  |||||||||||||||    
T  35063710 tataagtaccttggaacttgtgtagtcaaagtttcaaaagtgtaaagaaagatgttttcaatgcaa 35063775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 5493247 - 5493302
Alignment:
Q  38 ttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||| |||| || |||||||| ||||| ||||||||||||||||||||||||||    
T  5493247 ttggaacttgtatactcaaagttaaaaaagtgtaaagaattatgttttcaatgcaa 5493302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 7643751 - 7643793
Alignment:
Q  329 gaggagttgaatgcacaaatttcaatacgaaattactatattt 371  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  7643751 gaggagttgaatgcacaagtttcaatacaaaattactatattt 7643793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 14847650 - 14847696
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgc 91  Q
    ||||||||||||||||| ||||||| ||| ||| |||||||||||||    
T  14847650 ttgtgtagtcaaagttttaaaaatgcaaataatgatgttttcaatgc 14847696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 34422843 - 34422881
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaa 66  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  34422843 tataagtgtcatggaacttgtgtagtcaaagtttaaaaa 34422881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 7277735 - 7277776
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttc 86  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  7277735 ttgtgtaatcaaagtttaaaaaatgtaaagaattatgttttc 7277776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 10161396 - 10161331
Alignment:
Q  28 tataagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||  ||||||| ||||||| |||||||||||||| |||||| ||| |||||||||||||||    
T  10161396 tataagtaccttggaacttgtgtaatcaaagtttaaaaagtgtaaaaaatgatgttttcaatgcaa 10161331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 23245253 - 23245205
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  23245253 ttgtgtagtcaaagattaaaaagtgtaaagaatgatgttttcaatgcaa 23245205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 33584490 - 33584552
Alignment:
Q  31 aagtgtcttggaatttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||| ||||| || || |||||| |||||||||||| |||||||||| || ||||||||||||    
T  33584490 aagtatcttgaaacttttgtagttaaagtttaaaaagtgtaaagaataatattttcaatgcaa 33584552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 32006556 - 32006508
Alignment:
Q  45 ttgtgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    |||||||||||||||||||||| |||||||||| || ||||||||||||    
T  32006556 ttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaa 32006508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 34353318 - 34353257
Alignment:
Q  329 gaggagttgaatgcacaaatttcaatacgaaattactatatttgtttacttattcatttccc 390  Q
    |||||||||||||||||| ||||||| | ||||||||||||||| || ||||  ||||||||    
T  34353318 gaggagttgaatgcacaagtttcaatgcaaaattactatatttggttccttaaccatttccc 34353257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 78657 - 78702
Alignment:
Q  48 tgtagtcaaagtttaaaaaatgtaaagaattatgttttcaatgcaa 93  Q
    ||||||||||||||||||| |||| ||||| ||||||| |||||||    
T  78657 tgtagtcaaagtttaaaaagtgtatagaatgatgtttttaatgcaa 78702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University