View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_low_17 (Length: 356)
Name: NF11755_low_17
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 40542856 - 40543179
Alignment:
| Q |
16 |
tgaatgatgcaatttattccatgccttcctataaagctctagatcttgatggatttcaacccattttacttcttatatatatgtagatcgtagggagtta |
115 |
Q |
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| T |
40542856 |
tgaatgatgcaatttattccatgccttcctataaagctctagatcttgatg-atttcaacccattttacttcttatatatatgtagatcgtagggagtta |
40542954 |
T |
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| Q |
116 |
tattgtttgaaagcttgttttggagtgttttaatattggtattatccctcctaagttgacatagactcttattgttccaattcctaagagtaataaacct |
215 |
Q |
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| T |
40542955 |
tattgtttgaaagcttgttttggagtgttttaatattggtattatccctcctaagttgacatagactcttattgttccaattcctaagagtaataaacct |
40543054 |
T |
|
| Q |
216 |
caaagtttgatggcctttaggacgattatcctttataacattcttctcaagcttatctcaaaggttatggtttgaagaattagaccccatttgaagaatc |
315 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40543055 |
caaagtttgatggcctttaggacgactatcctttataacattcttctcaagcttatctcaaaggttatggtttgaagaattagaccccatttgaagaatc |
40543154 |
T |
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| Q |
316 |
ttattggtcttgtcaacgtagtttt |
340 |
Q |
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||||||||||||||||||||||||| |
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| T |
40543155 |
ttattggtcttgtcaacgtagtttt |
40543179 |
T |
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