View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11755_low_19 (Length: 337)
Name: NF11755_low_19
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 29259006 - 29259325
Alignment:
| Q |
1 |
cttgagaacttttcaagaggccaaaagatattaaactcatcccaatgttgctatcttcagactggattcatctccacttcgttgacgggttgaggtgcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29259006 |
cttgagaacttttcaagaggccaaaagatattaaactcatcccaatgttgctatcttcagactggattcatctccacttcgttgactggttgaggtgcga |
29259105 |
T |
|
| Q |
101 |
ctgctgcttccggtgaagatgtacaccaagccctgatgaataagataacnnnnnnn-gcgctaaaatgacgagagcaaaaatcaagaaatgcactgcaaa |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29259106 |
ctgctgcttccggtgaggatgtacaccaaggcctgatgaataagataacaaaaataagcgctaaaatgacgagagcaaaaatcaagaaatgcactgcaaa |
29259205 |
T |
|
| Q |
200 |
ggtgttatcgatatccgatgaggaattggttggcattgttctcttccggaaaagtaaagtggaattacatataataactattgaaacaagattatctcat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29259206 |
ggtgttatcgatatccgatgaggaattggttggcattgttctctttcggaaaagtaaagtggaattacatataataactattgaaacaagattatctcat |
29259305 |
T |
|
| Q |
300 |
ggttttatagaggcagaagc |
319 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
29259306 |
ggttttttagaggcagaagc |
29259325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University