View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_low_2 (Length: 488)
Name: NF11755_low_2
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 4800389 - 4799930
Alignment:
| Q |
16 |
agaagaagacaatgcatgttctaacatagacagagtaactaagaaaataaa--tggttatgtgattgtagcatagatgctaagaagaagtgagaacaact |
113 |
Q |
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| T |
4800389 |
agaagaagacaatgcatgttctaacatagacagagtaactaagaaaaaaaaaatggttatgtgattgtagcatagatgctaagaagaagtgagaacaact |
4800290 |
T |
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| Q |
114 |
tcagtcatagaaaaaggtgacaacaaccttttacttaattgcaaagtgaaaactatgtgttttattaatttctttatttcttcctctcgttagagattag |
213 |
Q |
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| T |
4800289 |
ttagtcatagaaaaaggtgacaacaaccttttacttaattgcaaagtgaaaactatgtgttttattaatttctttatttcttcctctcgttagagattag |
4800190 |
T |
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| Q |
214 |
tcctctctccttacttcattctatctacttactccta-aaaagtaagtttttgattataagtagattgaatgtagtttaattttgcttaacatggctgct |
312 |
Q |
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| T |
4800189 |
tcctctctccttacttcattctatctacttactcctaaaaaagtgagtttttgattataagtagattgaatgtagtttaattttgcttaacatggctgct |
4800090 |
T |
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| Q |
313 |
taggagtaagtaaatatcagtgaatgaagtttaatcaaaagcaaaacattactttattttcctaaatcaaaatttgaagctttaagtttgacacaatttg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4800089 |
taggagtaagtaaatatcagtgaatgaagtttaatcaaaagcaaaacattactttattttcctaaatcaaaatttgaagctttaagtttgacacaatttg |
4799990 |
T |
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| Q |
413 |
attaagaatnnnnnnnnttgtttgattatctttgaaaattcggagtttcttccagagata |
472 |
Q |
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| T |
4799989 |
attaagaataaaaaaaattgtttgattatctttgaaaattcggagtttcttccagagata |
4799930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 4807070 - 4807039
Alignment:
| Q |
18 |
aagaagacaatgcatgttctaacatagacaga |
49 |
Q |
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| T |
4807070 |
aagaagacaatgcatgttctaacatagacaga |
4807039 |
T |
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