View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_low_20 (Length: 335)
Name: NF11755_low_20
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 35522054 - 35522372
Alignment:
| Q |
1 |
ttaagatacaattattaggtggcatatatctgaaaaataacaattatagcacgagctatattgatagattaaaataacgaccacggggtatgtgtagcct |
100 |
Q |
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| T |
35522054 |
ttaagatacaattattaggtggcatatatatgaaaaataacaattatagcacgagctatattgatagattaaaataacgaccacggggtatgtgtagcct |
35522153 |
T |
|
| Q |
101 |
aggtaatgctactataatcaagaaacatctcaactcagtgcttataaattcatacaatctttaatttcatttgtagatacaaatagtcctaaagaccaag |
200 |
Q |
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| T |
35522154 |
aggtaatgctactataatcaagaaacatctcaactcagtgcttataaattcatacaatctttaatttcatttgtagatacaaatagtcctaaagaccaag |
35522253 |
T |
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| Q |
201 |
tctctgagcaaaagctagcttagcaacaatactatgagtttgttaaaagtagtttttgtttggtgcatatggttagggttatttgagttatcattagcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35522254 |
tctctgagcaaaagctagcttagcaacaatacaatgagtttgttaaaagtagtttttgtttggtgcatatggttagggttatttgagttatcattagcaa |
35522353 |
T |
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| Q |
301 |
aagtgagacactacaagtt |
319 |
Q |
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| T |
35522354 |
aagtgagacactacaagtt |
35522372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 158 - 303
Target Start/End: Original strand, 35505149 - 35505290
Alignment:
| Q |
158 |
tctttaatttcatttgtagatacaaatagtcctaaa-gaccaagtctctgagcaaaagctagcttagcaacaatactatgagtttgttaaaagtagtttt |
256 |
Q |
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||||| ||||||||| |||||||||| ||||| ||| ||| || |||||||||||||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
35505149 |
tctttcatttcatttatagatacaaacagtcccaaaagactaaatctctgagcaaaagctagcttagcaacaat-----gagtttgttgaaagcagtttt |
35505243 |
T |
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| Q |
257 |
tgtttggtgcatatggttagggttatttgagttatcattagcaaaag |
303 |
Q |
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| T |
35505244 |
tgtttggtgtatatgtttaggattatttgagttatcattagcaaaag |
35505290 |
T |
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