View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11755_low_21 (Length: 329)

Name: NF11755_low_21
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11755_low_21
NF11755_low_21
[»] chr2 (11 HSPs)
chr2 (16-141)||(16638643-16638768)
chr2 (200-310)||(16638474-16638584)
chr2 (11-78)||(16638783-16638850)
chr2 (200-305)||(12884840-12884946)
chr2 (202-295)||(11377175-11377268)
chr2 (200-310)||(5862176-5862286)
chr2 (212-310)||(13194364-13194462)
chr2 (212-309)||(36500149-36500247)
chr2 (200-275)||(12041112-12041187)
chr2 (200-275)||(15320111-15320186)
chr2 (200-310)||(41166616-41166726)
[»] chr4 (22 HSPs)
chr4 (200-310)||(20986861-20986971)
chr4 (200-310)||(3999216-3999326)
chr4 (212-310)||(48338800-48338898)
chr4 (200-310)||(8485140-8485250)
chr4 (200-284)||(54273444-54273529)
chr4 (200-284)||(10777887-10777971)
chr4 (212-294)||(23449508-23449590)
chr4 (228-310)||(41260571-41260653)
chr4 (200-310)||(48653415-48653525)
chr4 (201-309)||(45983794-45983902)
chr4 (200-295)||(15724310-15724405)
chr4 (212-303)||(21069527-21069617)
chr4 (201-275)||(46471912-46471986)
chr4 (218-312)||(48602039-48602132)
chr4 (200-301)||(1564568-1564669)
chr4 (200-263)||(15986092-15986155)
chr4 (200-295)||(23119817-23119912)
chr4 (200-310)||(18881564-18881674)
chr4 (200-254)||(29233307-29233361)
chr4 (200-310)||(48292941-48293051)
chr4 (201-310)||(35014734-35014843)
chr4 (200-308)||(45226805-45226913)
[»] chr1 (16 HSPs)
chr1 (200-310)||(27507023-27507133)
chr1 (201-284)||(33770219-33770302)
chr1 (200-310)||(36202959-36203069)
chr1 (200-284)||(26344569-26344653)
chr1 (201-310)||(19051587-19051695)
chr1 (200-275)||(25559533-25559608)
chr1 (201-275)||(35375660-35375734)
chr1 (200-310)||(44056195-44056305)
chr1 (213-273)||(24630440-24630500)
chr1 (200-255)||(15881716-15881771)
chr1 (202-273)||(36781726-36781796)
chr1 (201-275)||(16063303-16063377)
chr1 (202-275)||(50471585-50471656)
chr1 (200-308)||(18310430-18310536)
chr1 (258-307)||(45949104-45949153)
chr1 (227-292)||(50951554-50951619)
[»] chr8 (8 HSPs)
chr8 (200-309)||(12659781-12659890)
chr8 (200-284)||(35687850-35687934)
chr8 (200-301)||(11219436-11219537)
chr8 (200-275)||(4785716-4785791)
chr8 (200-275)||(45366847-45366922)
chr8 (200-310)||(26774847-26774957)
chr8 (212-254)||(9012362-9012404)
chr8 (200-276)||(28072650-28072726)
[»] chr7 (10 HSPs)
chr7 (202-310)||(29628675-29628783)
chr7 (202-312)||(524381-524491)
chr7 (212-310)||(40849320-40849418)
chr7 (207-310)||(31287295-31287398)
chr7 (200-275)||(1812971-1813046)
chr7 (202-246)||(33435507-33435551)
chr7 (229-308)||(27214731-27214810)
chr7 (212-310)||(11399584-11399681)
chr7 (202-292)||(26956312-26956401)
chr7 (201-295)||(10338044-10338140)
[»] scaffold0204 (1 HSPs)
scaffold0204 (212-310)||(26322-26420)
[»] chr5 (17 HSPs)
chr5 (202-310)||(40109059-40109167)
chr5 (200-310)||(25495554-25495663)
chr5 (202-295)||(28224377-28224470)
chr5 (215-310)||(23623464-23623559)
chr5 (200-310)||(36568168-36568278)
chr5 (202-275)||(23418455-23418528)
chr5 (200-268)||(15216554-15216622)
chr5 (213-292)||(2796355-2796434)
chr5 (213-292)||(2802516-2802595)
chr5 (201-307)||(691122-691228)
chr5 (238-312)||(18432549-18432623)
chr5 (200-310)||(33901511-33901621)
chr5 (200-294)||(41455351-41455445)
chr5 (200-249)||(4414742-4414791)
chr5 (202-275)||(19402730-19402803)
chr5 (200-249)||(42119338-42119387)
chr5 (213-273)||(22747121-22747181)
[»] chr3 (11 HSPs)
chr3 (200-310)||(51661883-51661993)
chr3 (222-310)||(42362752-42362840)
chr3 (202-284)||(4280780-4280861)
chr3 (200-281)||(45914727-45914808)
chr3 (201-281)||(40484479-40484559)
chr3 (202-310)||(51660519-51660622)
chr3 (212-310)||(2565824-2565922)
chr3 (202-312)||(38651553-38651663)
chr3 (200-310)||(51194708-51194820)
chr3 (200-275)||(34185408-34185483)
chr3 (212-275)||(45629674-45629736)
[»] chr6 (9 HSPs)
chr6 (202-275)||(6267490-6267563)
chr6 (200-284)||(15837210-15837294)
chr6 (200-295)||(9686520-9686615)
chr6 (200-281)||(4577572-4577653)
chr6 (203-275)||(29049027-29049099)
chr6 (200-310)||(8064950-8065060)
chr6 (229-310)||(891883-891964)
chr6 (204-284)||(7169605-7169686)
chr6 (265-310)||(28611188-28611233)
[»] scaffold0688 (1 HSPs)
scaffold0688 (243-310)||(1640-1707)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 16638768 - 16638643
Alignment:
Q  16 gtggggtgtgattctcgtcgctaaactattcgacgaaaatataattaaaataaatttcatacaccgtgtaagtagacttcaatttgtagctgaagggacg 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16638768 gtggggtgtgattctcgtagctaaactattcgacgaaaatataattaaaataaatttcatacaccgtgtaagtagacttcaatttgtagctgaagggacg 16638669  T
Q  116 tttaatttattgctagtaggggtgtt 141  Q
    ||||||||||||||||||||||||||    
T  16638668 tttaatttattgctagtaggggtgtt 16638643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 16638584 - 16638474
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  16638584 gcatttgattcagatgtattcggatcatatttttactaaaccgtatggttaggttatgtttgcggtttttattttagtaaccgaataaaaccaaacaaaa 16638485  T
Q  300 ccgcaacataa 310  Q
    |||||||||||    
T  16638484 ccgcaacataa 16638474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 16638850 - 16638783
Alignment:
Q  11 caaaggtggggtgtgattctcgtcgctaaactattcgacgaaaatataattaaaataaatttcataca 78  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||    
T  16638850 caaaggtggggtgtgattctcgtccctaaactattagacgaaaatataattaaaattaatttcataca 16638783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 12884946 - 12884840
Alignment:
Q  200 gcatttggttcagatgtattcggatca-tatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaa 298  Q
    ||||||||||||||||||||||||||| | |||||||| || ||||||||| ||||| ||||| | |||| ||||||  ||| |||  ||||||||| ||    
T  12884946 gcatttggttcagatgtattcggatcattttttttactcaatcgcatggtttggttcggtttggggttttgattttaccaactgaaccaaaccaaaccaa 12884847  T
Q  299 accgcaa 305  Q
    |||||||    
T  12884846 accgcaa 12884840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 11377175 - 11377268
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaac 295  Q
    ||||||||| |||||||||||||||  |||||||| ||||| || ||| | ||| |||| ||||||||||||||  || ||||| |||||||||    
T  11377175 atttggttcggatgtattcggatcacttttttactcaaccgtatagtttgattcagtttacgatttttattttaccaatcgaatcaaaccaaac 11377268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 5862176 - 5862286
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| ||||||||| || ||  |||||||| ||||||||| || ||||| ||||| | |||| ||||||  |||| ||  ||||||||| |||    
T  5862176 gcatttggttcggatgtattcagagcacttttttactcaaccgcatgttttggttcggtttgtggttttgattttaccaaccaaaccaaaccaaaccaaa 5862275  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  5862276 ccgcaatataa 5862286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 13194462 - 13194364
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    ||||||| |||||||  |||||||| |||| ||||||| ||||   |||||| |||||||||||   ||||||| ||||||||| ||||| ||||||||    
T  13194462 gatgtatccggatcacgtttttactcaaccacatggtttggtttgatttgcggtttttattttacggaccgaatcaaaccaaaccaaaccacaacataa 13194364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 309
Target Start/End: Original strand, 36500149 - 36500247
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaa-ccgaataaaaccaaacaaaaccgcaacata 309  Q
    |||||||||||||||| |||||||| |||||||| ||| ||||  |||| || |||||||||||  || |||||  ||||||||  |||||||||||||    
T  36500149 gatgtattcggatcatttttttactcaaccgcatagtttggtttggttttcggtttttattttaccaacccgaaccaaaccaaatcaaaccgcaacata 36500247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 12041112 - 12041187
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||  |||||||||||||||  |||||||| |||||||| ||| ||||  ||||||| |||| ||||||    
T  12041112 gcatttggtttggatgtattcggatcacttttttactcaaccgcatagtttggtttggtttgcggttttcatttta 12041187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 15320111 - 15320186
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||  ||||||||| ||| || |||||||| |||| ||||||| ||||  ||||||| |||||||||||    
T  15320111 gcatttggttaggatgtattcagataatttttttactcaaccacatggtttggtttggtttgcggtttttatttta 15320186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 41166726 - 41166616
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||  |||| |||| |||||  |||| ||| |||||||||||| | ||  ||||||| |||| ||||||  |||||||  ||||||||| |||    
T  41166726 gcatttggtttggatgcattcagatcactttttcactcaaccgcatggtttgatttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaa 41166627  T
Q  300 ccgcaacataa 310  Q
    || ||||||||    
T  41166626 ccacaacataa 41166616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 20986971 - 20986861
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||||||||||  |||||||| |||||||| ||| ||||  ||||| |||||| |||||| ||||||||  ||||||||| |||    
T  20986971 gcatttggttcggatgtattcggatcaattttttactcaaccgcattgtttggtttggtttgggattttgattttactaaccgaaccaaaccaaaccaaa 20986872  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  20986871 ccgcaatataa 20986861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 3999326 - 3999216
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    |||||||||| ||||||||| | ||||  || ||||| |||| ||||||| ||||| ||||||| |||||||||||  ||| |||| ||||||||| |||    
T  3999326 gcatttggttaagatgtatttgaatcactttcttactcaaccacatggtttggttcggtttgcggtttttattttaccaactgaattaaaccaaaccaaa 3999227  T
Q  300 ccgcaacataa 310  Q
    |||||||||||    
T  3999226 ccgcaacataa 3999216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 48338898 - 48338800
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    |||||||||||||||  ||||| || |||||||||||| ||||  ||||||| |||| ||||||  |||||||  ||||||||||||||||||||||||    
T  48338898 gatgtattcggatcacttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacaaaaccgcaacataa 48338800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 8485250 - 8485140
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||| ||| |||||||||| ||||| | |||||| |||||||||||| ||| | ||||||| |||| ||||||  |||||||  ||||||||| |||    
T  8485250 gcatttgattcggatgtattcgaatcatttatttactcaaccgcatggtttggtccggtttgcggttttgattttaccaaccgaactaaaccaaaccaaa 8485151  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  8485150 ccgcaatataa 8485140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 54273444 - 54273529
Alignment:
Q  200 gcatttggttcagatgtattcggatcatattttt-actgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    ||||||||||| |||||||||||||||| ||||| ||| ||||||||| || ||||  ||||||| |||||||||||| |||||||    
T  54273444 gcatttggttcggatgtattcggatcattttttttactcaaccgcatgattcggtttggtttgcggtttttattttagcaaccgaa 54273529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 10777887 - 10777971
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||||    ||| | ||||| |||||||||||| |||||||    
T  10777887 gcatttgattcagatgtattcggataatatttttactcaaccgcatggtacaattcggcttgcggtttttattttagcaaccgaa 10777971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 294
Target Start/End: Original strand, 23449508 - 23449590
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaa 294  Q
    |||||||||||||||| |||||||| |||||||||||| ||||| ||||||  |||| ||||||  |||||||  ||||||||    
T  23449508 gatgtattcggatcatttttttactcaaccgcatggtttggttcagtttgcagttttgattttaccaaccgaaccaaaccaaa 23449590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 310
Target Start/End: Complemental strand, 41260653 - 41260571
Alignment:
Q  228 atttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    ||||||||| |||||||||||| |||||  |||| | |||||||||||  |||||||| ||||||||| |||| |||||||||    
T  41260653 atttttactcaaccgcatggttcggttcaatttgtggtttttattttaccaaccgaatcaaaccaaaccaaactgcaacataa 41260571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 48653415 - 48653525
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||| | ||||| |||||||| ||| |||||||| ||||| ||||| |||||| |||||   || ||||  ||||||||| |||    
T  48653415 gcatttggttcggatgtatttgaatcatttttttactcaactgcatggtttggttcggtttgtgattttgattttgtcaatcgaaccaaaccaaaccaaa 48653514  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  48653515 ccgcaatataa 48653525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 309
Target Start/End: Complemental strand, 45983902 - 45983794
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaac 300  Q
    |||||||||| |||||| ||| || || || || || |||| ||||||| ||||  ||||||| |||| ||||||  |||||||| ||||||||| ||||    
T  45983902 catttggttcggatgtaatcgaattattttcttgctcaaccacatggtttggtttggtttgcggttttcattttaccaaccgaatcaaaccaaaccaaac 45983803  T
Q  301 cgcaacata 309  Q
    |||||||||    
T  45983802 cgcaacata 45983794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 15724405 - 15724310
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaac 295  Q
    ||||||||||| |||||| ||| ||||| || || || |||||||||||| ||||  |||||| ||||||||||||  |||||||  |||||||||    
T  15724405 gcatttggttcggatgtaatcgtatcattttcttgctcaaccgcatggtttggtttggtttgcaatttttattttaccaaccgaaccaaaccaaac 15724310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 21069617 - 21069527
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgc 303  Q
    |||||||||||||||  |||||||| ||||||||||||  |||| ||||||| |||| ||||||  |||||||  ||||||||| |||||||    
T  21069617 gatgtattcggatcaattttttactcaaccgcatggttttgttcggtttgcg-ttttgattttaccaaccgaaccaaaccaaaccaaaccgc 21069527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 46471986 - 46471912
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    |||||||||| |||||||||||||||  |||||||| ||||||||| || ||||  ||||||| |||| ||||||    
T  46471986 catttggttcggatgtattcggatcacttttttactcaaccgcatgatttggtttggtttgcggttttcatttta 46471912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 48602039 - 48602132
Alignment:
Q  218 ttcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataaaa 312  Q
    |||| ||||| |||||||| |||||||||||| ||||| |||||| |||||||| |||  |||||||  || |||||| ||||| ||||||||||    
T  48602039 ttcgaatcatttttttactcaaccgcatggttcggttcggtttgc-atttttatcttaccaaccgaaccaatccaaaccaaaccacaacataaaa 48602132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 301
Target Start/End: Original strand, 1564568 - 1564669
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||| |||| ||  ||||| | |||||||||||| ||||| ||||||| |||| ||||||  ||| |||  ||||||||| |||    
T  1564568 gcatttggttcggatgtattgggataattcttttagttaaccgcatggtttggttcggtttgcggttttgattttaccaactgaaccaaaccaaaccaaa 1564667  T
Q  300 cc 301  Q
    ||    
T  1564668 cc 1564669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 15986092 - 15986155
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcg 263  Q
    ||||||| ||| |||||||||||||||  |||||| | |||||||||||| ||||| |||||||    
T  15986092 gcatttgattcggatgtattcggatcaattttttattcaaccgcatggtttggttcagtttgcg 15986155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 23119817 - 23119912
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaac 295  Q
    ||||||||||  |||||| || |||||| || || || ||||||||| || ||||| |||||||||||| ||||||  |||||||  |||||||||    
T  23119817 gcatttggttaggatgtaatcagatcattttcttgctcaaccgcatgatttggttcggtttgcgattttcattttaccaaccgaactaaaccaaac 23119912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 18881564 - 18881674
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||  |||||||||| ||||  ||| |||| |||||  | ||| ||||  |||||||||||||||||||  ||| |||  ||||| ||| |||    
T  18881564 gcatttggtttggatgtattcgaatcacttttatactcaaccgtgtagtttggtttggtttgcgatttttattttatcaactgaactaaaccgaaccaaa 18881663  T
Q  300 ccgcaacataa 310  Q
    |||||||||||    
T  18881664 ccgcaacataa 18881674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 29233361 - 29233307
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggtt 254  Q
    |||||||||| ||||||||||||||||  ||| |||| |||||||||||| ||||    
T  29233361 gcatttggtttagatgtattcggatcaattttctactcaaccgcatggtttggtt 29233307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 48292941 - 48293051
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||  |||||||||||||||  ||||| || |||| ||||||| ||||  ||||||| |||| ||||||   ||| ||  ||||||||| |||    
T  48292941 gcatttggtttggatgtattcggatcacttttttcctcaaccacatggtttggtttggtttgcggttttcattttacctacccaaacaaaccaaaccaaa 48293040  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  48293041 ccgcaagataa 48293051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 35014843 - 35014734
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaac 300  Q
    |||||||| | ||||||||| || ||| |||||||| |||||||||||| || ||  |||||| ||||||| |||  ||| |||  |  |||||| ||||    
T  35014843 catttggtccggatgtattccgaccatttttttactcaaccgcatggtttgggtcgatttgcggtttttatcttatcaactgaaccagtccaaaccaaac 35014744  T
Q  301 cgcaacataa 310  Q
    ||||||||||    
T  35014743 cgcaacataa 35014734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 45226913 - 45226805
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||| |||||||||||||  ||||| | |||||| ||||  ||| || ||||  |||||||||||||||||||   || |||  |||| |||| |||    
T  45226913 gcatttgattcagatgtattcatatcatttctttactcaaccatatgatttggtttagtttgcgatttttattttacccactgaaccaaactaaaccaaa 45226814  T
Q  300 ccgcaacat 308  Q
    |||||||||    
T  45226813 ccgcaacat 45226805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 27507023 - 27507133
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||||||||||| |||||||| ||||||||| || ||||| ||||||| |||| ||||||  ||| |||  ||||||||| |||    
T  27507023 gcatttggttcggatgtattcggatcatttttttactcaaccgcatgctttggttcggtttgcggttttgattttaccaactgaaccaaaccaaaccaaa 27507122  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  27507123 ccgcaatataa 27507133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 284
Target Start/End: Complemental strand, 33770302 - 33770219
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    |||||| ||| |||||||||| |||||||||||| | ||| ||||| || |||||||||||||||||||||||||| |||||||    
T  33770302 catttgattcggatgtattcgaatcatatttttattcaactgcatgattcggttctgtttgcgatttttattttagcaaccgaa 33770219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 36202959 - 36203069
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||  ||||||||||| ||| ||||||||| |||||||||||| ||||  |||||||  ||| ||||||  |||||||  | ||||||| |||    
T  36202959 gcatttggtttggatgtattcggttcacatttttactcaaccgcatggtttggtttggtttgcggctttcattttaccaaccgaaccataccaaaccaaa 36203058  T
Q  300 ccgcaacataa 310  Q
    |||||||||||    
T  36203059 ccgcaacataa 36203069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 26344569 - 26344653
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    ||||||||||| |||||||||||||||  |||||||| |||||||||||| ||||| ||||||  |||| ||||||  |||||||    
T  26344569 gcatttggttcggatgtattcggatcaattttttactcaaccgcatggtttggttcggtttgcagttttgattttaccaaccgaa 26344653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 19051695 - 19051587
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaac 300  Q
    |||||||||||||||||||  ||| || |||||||| |||||||||||| | | | ||||||| |||||||  || ||||||||| || ||||||  |||    
T  19051695 catttggttcagatgtatttagataatttttttacttaaccgcatggtttgctgcggtttgcggtttttatcctactaaccgaat-aatccaaacctaac 19051597  T
Q  301 cgcaacataa 310  Q
    ||||||||||    
T  19051596 cgcaacataa 19051587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 25559533 - 25559608
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||| ||| |||||||||||| |||||||| ||||| |||||| ||||| ||||| | |||| ||||||    
T  25559533 gcatttggttcggatatattcggatcatttttttactcaaccgtatggtttggttcggtttgtggttttgatttta 25559608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 35375734 - 35375660
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||  |||||||| |||||| |||||||| ||||||||||||  |||  ||||||| |||||||||||    
T  35375734 catttggttcgaatgtattcagatcatttttttactcaaccgcatggttttgtttggtttgcggtttttatttta 35375660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 44056305 - 44056195
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||   ||||| |||| |||| || ||||| |||||||||||| |||| |||||||| |||| ||||||  ||| |||  ||||||||| |||    
T  44056305 gcatttggtttgaatgtaatcgggtcattttcttactcaaccgcatggtttggttatgtttgcggttttcattttaccaactgaaccaaaccaaaccaaa 44056206  T
Q  300 ccgcaacataa 310  Q
    | |||||||||    
T  44056205 ctgcaacataa 44056195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 24630500 - 24630440
Alignment:
Q  213 atgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattt 273  Q
    ||||||| ||||||  |||||||| |||||||||||| ||||| ||||||| |||||||||    
T  24630500 atgtatttggatcacttttttactcaaccgcatggtttggttcagtttgcggtttttattt 24630440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 15881716 - 15881771
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttc 255  Q
    |||||||||||| ||||||| |||||||||||||||| |||  ||||||| |||||    
T  15881716 gcatttggttcaaatgtatttggatcatatttttactcaactacatggtttggttc 15881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 36781726 - 36781796
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattt 273  Q
    ||||||||  ||||||||| ||||| ||||||||| |||||||||||| ||||| ||||||| |||| ||||    
T  36781726 atttggtttggatgtattcagatca-atttttactcaaccgcatggtttggttcggtttgcggttttgattt 36781796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 16063377 - 16063303
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    |||||| || ||||||||||| || || |||||||| ||||||||| || ||||| ||||||| |||| ||||||    
T  16063377 catttgatttagatgtattcgaataatttttttactcaaccgcatgatttggttcagtttgcggttttgatttta 16063303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 50471656 - 50471585
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    |||||||||| |||||||||||||  |||| |||| ||| |||||||| ||||| ||||||| |||| ||||||    
T  50471656 atttggttcaaatgtattcggatc--atttctactcaactgcatggtttggttcggtttgcggttttgatttta 50471585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 18310536 - 18310430
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||  ||||||| |||| ||| |||| ||||||| ||||  ||| | | |||||||||||  || ||||  ||||||||| |||    
T  18310536 gcatttggttcggatgtat--ggatcattttttgactcaaccacatggtttggtttggttagtggtttttattttatcaaacgaaccaaaccaaaccaaa 18310439  T
Q  300 ccgcaacat 308  Q
    |||||||||    
T  18310438 ccgcaacat 18310430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 45949104 - 45949153
Alignment:
Q  258 tttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaaca 307  Q
    |||||| |||||||||||  |||||||  |||||||||||||||||||||    
T  45949104 tttgcggtttttattttaccaaccgaaccaaaccaaacaaaaccgcaaca 45949153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 50951554 - 50951619
Alignment:
Q  227 tatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaacca 292  Q
    |||||||| | |||||||||||| ||||| ||| ||| ||||||||||| ||||| ||| ||||||    
T  50951554 tatttttattcaaccgcatggtttggttcggttggcggtttttattttactaaccaaatcaaacca 50951619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 12659781 - 12659890
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||||||||| | || ||||| |||||||||||| ||||| ||||||| ||| |||||||  |||||||  ||||||||| |||    
T  12659781 gcatttggttcggatgtattcggatcgttttcttactcaaccgcatggtttggttcagtttgcggtttctattttaccaaccgaaccaaaccaaaccaaa 12659880  T
Q  300 ccgcaacata 309  Q
    || |||||||    
T  12659881 ccacaacata 12659890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 35687850 - 35687934
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    |||||||  |||||||||||| ||||||||||||||| ||||||||| || ||||   |||||||||||||||||||||||||||    
T  35687850 gcatttgactcagatgtattctgatcatatttttactcaaccgcatgatttggtttgatttgcgatttttattttagtaaccgaa 35687934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 11219537 - 11219436
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||||||||||| |||||||| || | ||||||| ||||| ||||||| |||| ||||||  |||||||  ||||||||| |||    
T  11219537 gcatttggttcggatgtattcggatcatttttttactcaatcacatggtttggttcggtttgcggttttgattttaccaaccgaaccaaaccaaaccaaa 11219438  T
Q  300 cc 301  Q
    ||    
T  11219437 cc 11219436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 4785791 - 4785716
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    |||||||||||||||||||| ||||||  |||||||| |||||||||||| ||||| ||||||  |||| ||||||    
T  4785791 gcatttggttcagatgtatttggatcaattttttactcaaccgcatggtttggttcggtttgcagttttgatttta 4785716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 45366922 - 45366847
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||| ||||||||||| |||| |||||||| |||  ||| ||| ||||| ||||| |||||||||||||    
T  45366922 gcatttggttcggatgtattcgggtcatttttttactcaacaacatagtttggttcggtttgtgatttttatttta 45366847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 26774847 - 26774957
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    |||||||| || |||||||||  ||| | || ||||| |||||||||||| ||||| ||||||  |||||||||||  |||||||  ||| ||||| |||    
T  26774847 gcatttggatcggatgtattcatatcgttttcttactcaaccgcatggtttggttcagtttgcagtttttattttaccaaccgaaccaaatcaaaccaaa 26774946  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  26774947 ccgcaaaataa 26774957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 9012362 - 9012404
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggtt 254  Q
    |||||||||||||||| |||||||| |||||||||||| ||||    
T  9012362 gatgtattcggatcatttttttactcaaccgcatggtttggtt 9012404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 28072650 - 28072726
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttag 276  Q
    ||||||||||| || |||||  || | |||||||||| ||||||||| || ||||  ||||||| ||||||||||||    
T  28072650 gcatttggttcggaagtatttagaacttatttttactcaaccgcatgttttggtttggtttgcggtttttattttag 28072726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 310
Target Start/End: Complemental strand, 29628783 - 29628675
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaacc 301  Q
    ||||||||  |||||||||||||||  ||||| || |||||||||||| ||||  |||||||||||| ||||||  |||||||  ||||||||| |||||    
T  29628783 atttggtttggatgtattcggatcacttttttccttaaccgcatggtttggtttggtttgcgattttcattttaccaaccgaaccaaaccaaaccaaacc 29628684  T
Q  302 gcaacataa 310  Q
    |||||||||    
T  29628683 gcaacataa 29628675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 524381 - 524491
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaacc 301  Q
    ||||||||  |||||||||||||||  ||||| || |||||||||||| ||||  ||||||| |||| ||||||  |||||||  ||||||||| |||||    
T  524381 atttggtttggatgtattcggatcacttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaacc 524480  T
Q  302 gcaacataaaa 312  Q
    |||||||||||    
T  524481 gcaacataaaa 524491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 40849418 - 40849320
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    |||||||||||||||  |||||||| |||||||||||| ||||  ||||||| |||| ||||||  |||||||  ||||||||| ||||||||||||||    
T  40849418 gatgtattcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaacataa 40849320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 310
Target Start/End: Original strand, 31287295 - 31287398
Alignment:
Q  207 gttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaac 306  Q
    |||| ||||||||| |||||| |||||||| |||||||||||| ||||| ||||||| |||| ||||||  |||||||  ||||||||  |||||||||     
T  31287295 gttcggatgtattcagatcatttttttactcaaccgcatggtttggttcggtttgcggttttaattttaccaaccgaaccaaaccaaatcaaaccgcaat 31287394  T
Q  307 ataa 310  Q
    ||||    
T  31287395 ataa 31287398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 1813046 - 1812971
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||| ||| ||||||||||||  ||||||| |||||||| ||| ||||| ||||||| |||| ||||||    
T  1813046 gcatttggttcggatatattcggatcattattttactcaaccgcatagtttggttcagtttgcggttttgatttta 1812971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 33435551 - 33435507
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatg 246  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||    
T  33435551 atttgattcagatgtattcagatcatatttttacttaaccgcatg 33435507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 308
Target Start/End: Original strand, 27214731 - 27214810
Alignment:
Q  229 tttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacat 308  Q
    |||||||| |||| |||||||  |||| |||||||||||||||||||  |||| ||| ||||||||  |||| |||||||    
T  27214731 tttttactcaaccacatggttcagttcggtttgcgatttttattttacgaaccaaattaaaccaaatcaaactgcaacat 27214810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 11399681 - 11399584
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    |||||||||||||||  |||||| | |||||||||||| | ||  ||||||| |||| |||||| ||||||||  ||| ||||| |||||||| |||||    
T  11399681 gatgtattcggatcacttttttagtcaaccgcatggtttgatttggtttgcggttttcattttactaaccgaaccaaa-caaaccaaaccgcagcataa 11399584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 292
Target Start/End: Complemental strand, 26956401 - 26956312
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaacca 292  Q
    |||||||| ||||||||||| ||||  |||||||| |||||| ||||| || || ||||| | |||||||||||  |||||||| ||||||    
T  26956401 atttggtttagatgtattcgaatcacttttttactcaaccgcgtggtttggatcggtttgtg-tttttattttaccaaccgaatcaaacca 26956312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 295
Target Start/End: Original strand, 10338044 - 10338140
Alignment:
Q  201 catttggttcagatgtattcggatca--tatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaac 295  Q
    |||||||||| |||||||||||||||  | ||||| || |||||||||||| |||||  |||| | |||| ||||||  |||||||  |||||||||    
T  10338044 catttggttcggatgtattcggatcatttttttttgctcaaccgcatggtttggttcgatttgtggttttgattttaccaaccgaactaaaccaaac 10338140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 26420 - 26322
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    |||||||||||||||  ||||| || |||||||||||| ||||  ||||||| |||| ||||||  |||||||  ||||||||||||||||||||||||    
T  26420 gatgtattcggatcacttttttgctcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaacaaaaccgcaacataa 26322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 40109059 - 40109167
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaacc 301  Q
    ||||||| | |||||||||  |||| ||||||||| ||||| ||| || | ||  |||||||||||||||||||  |||||| | |||||||||||||||    
T  40109059 atttggtccggatgtattcatatcaaatttttactcaaccgtatgatttgatttggtttgcgatttttattttaacaaccgagtcaaaccaaacaaaacc 40109158  T
Q  302 gcaacataa 310  Q
    |||||||||    
T  40109159 gcaacataa 40109167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 25495663 - 25495554
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||| ||||||| ||||| |||||| |||||||| |||||||||||| |||||  |||||| |||| ||||||  |||||||  ||||||||| |||    
T  25495663 gcatttgattcagatatattcagatcatttttttactcaaccgcatggtttggttc-atttgcggttttaattttaccaaccgaaccaaaccaaactaaa 25495565  T
Q  300 ccgcaacataa 310  Q
    |||||| ||||    
T  25495564 ccgcaatataa 25495554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 28224377 - 28224470
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaac 295  Q
    |||||||||||||||||||||||||| |||||||| ||| |||| ||| ||||  ||||||| |||| ||||||  |||||||  |||||||||    
T  28224377 atttggttcagatgtattcggatcatttttttactcaactgcatagtttggtttggtttgcggttttgattttaccaaccgaaccaaaccaaac 28224470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 23623559 - 23623464
Alignment:
Q  215 gtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    ||||||||||||  |||||||| |||||||||||| ||||  ||||||| |||| |||| |  |||||||  ||||||||| ||||||||||||||    
T  23623559 gtattcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaaccaaaccaaaccgcaacataa 23623464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 36568278 - 36568168
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||||||||||||| |||||  |||| ||| |||| ||||||| ||||| ||||||| |||| ||||||  |||||||  ||||||| | |||    
T  36568278 gcatttggttcagatgtattcagatcaatttttaactcaaccacatggtttggttcagtttgcggttttgattttaccaaccgaaccaaaccaatccaaa 36568179  T
Q  300 ccgcaacataa 310  Q
    || ||| ||||    
T  36568178 ccacaatataa 36568168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 23418528 - 23418455
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||| ||| |||||||||||| || ||||| |||||| ||||| ||||| ||||| | |||||||||||    
T  23418528 atttggttcggatatattcggatcattttattactcaaccgcgtggtttggttcggtttgaggtttttatttta 23418455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 15216554 - 15216622
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttt 268  Q
    ||||||||||| |||||||||||||||| |||||||| ||||   ||||| ||||| ||||||| ||||    
T  15216554 gcatttggttcggatgtattcggatcatttttttactcaaccatgtggttcggttcggtttgcggtttt 15216622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 2796355 - 2796434
Alignment:
Q  213 atgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaacca 292  Q
    ||||||||||||||  |||||||| |||||||||||| | ||| ||||| | |||||||||||  |||| ||| ||||||    
T  2796355 atgtattcggatcacttttttacttaaccgcatggtttgtttcagtttgtggtttttattttaccaaccaaatcaaacca 2796434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 2802516 - 2802595
Alignment:
Q  213 atgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaacca 292  Q
    ||||||||||||||  |||||||| |||||||||||| | ||| ||||| | |||||||||||  |||| ||| ||||||    
T  2802516 atgtattcggatcacttttttacttaaccgcatggtttgtttcagtttgtggtttttattttaccaaccaaatcaaacca 2802595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 691122 - 691228
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaac 300  Q
    |||||| ||| |||||| | ||||||| || || || |||||||||||| ||||   |||||| |||| ||||||  |||||||  ||||||||| ||||    
T  691122 catttgattcggatgtaattggatcattttcttgctcaaccgcatggtttggtttgatttgcggttttcattttaccaaccgaaccaaaccaaaccaaac 691221  T
Q  301 cgcaaca 307  Q
    |||||||    
T  691222 cgcaaca 691228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 18432623 - 18432549
Alignment:
Q  238 aaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataaaa 312  Q
    |||||||| ||| ||||  ||||||| |||||||||||  |||||||  ||| ||||| ||||||||||||||||    
T  18432623 aaccgcatagtttggtttggtttgcggtttttattttatcaaccgaaccaaatcaaaccaaaccgcaacataaaa 18432549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 33901511 - 33901621
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||| |||||||||| || || |||| | | |||||| ||||| | |||  |||||| |||||||||||  |||| ||| || | |||| |||    
T  33901511 gcatttggttcggatgtattcgaattattttttaattcaaccgcgtggtttgattcaatttgcggtttttattttaccaacctaatcaatctaaaccaaa 33901610  T
Q  300 ccgcaacataa 310  Q
    |||||||||||    
T  33901611 ccgcaacataa 33901621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 41455445 - 41455351
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaa 294  Q
    ||||||||||| ||||||||| |||||  |||||||| |||| ||||||| |||||  |||||| || | ||||||  |||||||  ||||||||    
T  41455445 gcatttggttcggatgtattctgatcaattttttactcaaccacatggtttggttcgatttgcggttatgattttaccaaccgaaccaaaccaaa 41455351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 4414791 - 4414742
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggtt 249  Q
    |||||||||||||||||||||  ||||| |||||||| ||||| ||||||    
T  4414791 gcatttggttcagatgtattcatatcatttttttactcaaccgtatggtt 4414742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 19402803 - 19402730
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||  |||||||| |||  || |||||||| ||||||| |||| |||| |||||||| |||||||||||    
T  19402803 atttggtttggatgtatttggacaatttttttactcaaccgcacggtttggttatgtttgcggtttttatttta 19402730  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 42119387 - 42119338
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggtt 249  Q
    ||||||| ||| |||||||||||||||  |||||||| ||||||||||||    
T  42119387 gcatttgattcggatgtattcggatcaattttttactcaaccgcatggtt 42119338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 22747121 - 22747181
Alignment:
Q  213 atgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattt 273  Q
    ||||||||||||||  |||||| | |||||||||||| | ||| ||||||| |||||||||    
T  22747121 atgtattcggatcaattttttattcaaccgcatggtttgattcggtttgcggtttttattt 22747181  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 51661883 - 51661993
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||| ||| |||||||||||||||  |||||| | |||||||||||| ||||  ||||||| ||||| |||||  |||||||  || |||||| |||    
T  51661883 gcatttgattcggatgtattcggatcacttttttattcaaccgcatggtttggtttggtttgcggtttttgttttaccaaccgaaccaacccaaaccaaa 51661982  T
Q  300 ccgcaacataa 310  Q
    |||||||||||    
T  51661983 ccgcaacataa 51661993  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 42362752 - 42362840
Alignment:
Q  222 gatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    |||||| |||||||| |||||||||||| ||||  ||||||| |||| ||||||  ||| |||| ||||||||| ||||||||||||||    
T  42362752 gatcatttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaactgaatcaaaccaaaccaaaccgcaacataa 42362840  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 4280861 - 4280780
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    ||||||||  ||||||||| |||||| |||||||| |||||||||||| ||||| ||||||| |||||||||||  |||||||    
T  4280861 atttggtttggatgtattcagatcat-tttttactcaaccgcatggtttggttcggtttgcggtttttattttaccaaccgaa 4280780  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 281
Target Start/End: Original strand, 45914727 - 45914808
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaacc 281  Q
    ||||||||||| |||||||||||||||   ||||||| |||||||||||| ||||  ||||||| |||| |||||| |||||    
T  45914727 gcatttggttcggatgtattcggatcaatattttactcaaccgcatggtttggtttggtttgcggttttgattttactaacc 45914808  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 281
Target Start/End: Complemental strand, 40484559 - 40484479
Alignment:
Q  201 catttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaacc 281  Q
    ||||||| || |||| ||||| |||||||||||||| ||||||||||||   ||| |||||||||||| ||||||| ||||    
T  40484559 catttggctcggatgcattcgaatcatatttttactcaaccgcatggttcatttcagtttgcgattttcattttagcaacc 40484479  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 51660519 - 51660622
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaacc 301  Q
    |||||||| |||||||||| |||||| ||||||||  ||| ||||||| ||||     |||| |||||||||||  ||| |||| ||||||||| |||||    
T  51660519 atttggtttagatgtattctgatcatttttttactataccacatggtttggtt-----tgcggtttttattttaccaactgaatcaaaccaaaccaaacc 51660613  T
Q  302 gcaacataa 310  Q
    |||||||||    
T  51660614 gcaacataa 51660622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 310
Target Start/End: Original strand, 2565824 - 2565922
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    ||||||||||||| || |||||||| ||| | |||||| ||||| ||||||| |||| ||||||  |||| ||  ||||||||| ||||||||| ||||    
T  2565824 gatgtattcggattatttttttactcaactggatggtttggttcggtttgcggttttgattttaccaaccaaaacaaaccaaaccaaaccgcaatataa 2565922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 38651553 - 38651663
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaacc 301  Q
    ||||||||| |||||| || |||||| || || || |||||||||||| | ||  ||||||| |||| ||||||  ||| |||  ||||||||| |||||    
T  38651553 atttggttcggatgtaatccgatcattttcttgctcaaccgcatggtttgatttggtttgcggttttcattttaccaactgaaccaaaccaaaccaaacc 38651652  T
Q  302 gcaacataaaa 312  Q
    |||||||||||    
T  38651653 gcaacataaaa 38651663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 51194820 - 51194708
Alignment:
Q  200 gcatttggttcagatgtattcggatcatattttt--actgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaa 297  Q
    ||||||| ||| |||||||||||||||| |||||  ||| ||  | |||||| ||||  |||| || |||||||||||| |||||||  ||||| ||| |    
T  51194820 gcatttgattcggatgtattcggatcatttttttttactcaattgtatggtttggtttagtttacggtttttattttagcaaccgaaccaaaccgaacta 51194721  T
Q  298 aaccgcaacataa 310  Q
    |||||||||||||    
T  51194720 aaccgcaacataa 51194708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 34185408 - 34185483
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||| |||| |||| |||||| |||| ||| |||||||||||| ||||  ||||||  |||||||||||    
T  34185408 gcatttggttcggatgcattcagatcattttttgactcaaccgcatggttcggtttggtttgcactttttatttta 34185483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 45629736 - 45629674
Alignment:
Q  212 gatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    ||||||||||||||| ||||||||| |||||||||||| |||||  |||||  |||||||||||    
T  45629736 gatgtattcggatca-atttttactcaaccgcatggtttggttcgatttgcagtttttatttta 45629674  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 6267563 - 6267490
Alignment:
Q  202 atttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    |||||||||||||||||||  |||| ||||||||| |||||||||||| ||||  ||||||| |||||||||||    
T  6267563 atttggttcagatgtattcatatcacatttttactcaaccgcatggtttggtttggtttgcggtttttatttta 6267490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 15837210 - 15837294
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    ||||||||||| |||| ||| ||||||||||||| || |||| ||||||| ||||  ||||| | |||||||||||| |||||||    
T  15837210 gcatttggttcggatgaatttggatcatatttttccttaaccacatggttcggtttggtttgtggtttttattttagcaaccgaa 15837294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 9686615 - 9686520
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaac 295  Q
    ||||||| ||| |||||||||| ||||| |||||||| |||||||||||| | ||| | ||||| |||| ||||||  |||||||  |||||||||    
T  9686615 gcatttgattcggatgtattcgaatcatttttttactcaaccgcatggtttgattcggattgcggttttgattttaccaaccgaaccaaaccaaac 9686520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 4577653 - 4577572
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaacc 281  Q
    ||||||||||  |||| ||||||||||  |||||||| ||||||| |||| ||||| ||||||  ||||||||||| |||||    
T  4577653 gcatttggtttggatgaattcggatcacttttttacttaaccgcaaggtttggttcggtttgcagtttttattttattaacc 4577572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 29049099 - 29049027
Alignment:
Q  203 tttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttatttta 275  Q
    |||| ||| |||||||| ||||||| |||||||| |||||||||||| ||||  ||||||| |||| ||||||    
T  29049099 tttgattcggatgtatttggatcatttttttactcaaccgcatggtttggtttggtttgcggttttgatttta 29049027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 8065060 - 8064950
Alignment:
Q  200 gcatttggttcagatgtattcggatcatatttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaa 299  Q
    ||||||||||  |||||||| ||||||  |||||||| |||  ||||| | ||||| ||||| | |||||||||||  |||||||  |||| |||  |||    
T  8065060 gcatttggttttgatgtattaggatcacttttttactcaacaacatgggttggttcggtttgtggtttttattttacaaaccgaaccaaactaaatcaaa 8064961  T
Q  300 ccgcaacataa 310  Q
    |||||||||||    
T  8064960 ccgcaacataa 8064950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 891883 - 891964
Alignment:
Q  229 tttttactgaaccgcatggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    |||||||| |||||||||||| ||||  ||||||| |||| ||||||  |||||||  ||| ||||| ||||||||| ||||    
T  891883 tttttactaaaccgcatggtttggtttggtttgcgcttttcattttacgaaccgaaccaaatcaaacgaaaccgcaaaataa 891964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 7169605 - 7169686
Alignment:
Q  204 ttggttcagatgtattcggatcatatttttactgaaccgca-tggttaggttctgtttgcgatttttattttagtaaccgaa 284  Q
    ||||||| |||||||||||||||| |||||| | ||||||| ||||| ||||| ||||||  |||| ||||||  |||||||    
T  7169605 ttggttcggatgtattcggatcatttttttaatcaaccgcattggtttggttcggtttgcagttttgattttaccaaccgaa 7169686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 28611233 - 28611188
Alignment:
Q  265 tttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    |||||||||||| |||||||| || || ||||||||||||||||||    
T  28611233 tttttattttagcaaccgaattaatccgaacaaaaccgcaacataa 28611188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 1707 - 1640
Alignment:
Q  243 catggttaggttctgtttgcgatttttattttagtaaccgaataaaaccaaacaaaaccgcaacataa 310  Q
    ||||||| ||||  ||||||| |||||||||||  |||||||| ||||||||| ||||| ||||||||    
T  1707 catggtttggtttggtttgcggtttttattttaccaaccgaatcaaaccaaaccaaaccacaacataa 1640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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