View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11755_low_26 (Length: 271)
Name: NF11755_low_26
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_26 |
 |  |
|
Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 25469405 - 25469645
Alignment:
| Q |
2 |
aattatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatat |
101 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||| |||| |
|
|
| T |
25469405 |
aattatttatcctcaaaaatattactatgtttttgggaaacgcggtcaatgtttgctgcattggtccaaaatcttctgagtccaagtatagttataatat |
25469504 |
T |
 |
| Q |
102 |
attggctaagtctcagacaagtaagctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgatt |
201 |
Q |
| |
|
|| ||| ||| ||| ||| ||||| |||| ||| |||||||||||||||||||||||||||| || |||||||| ||||| ||||||| |||||| |
|
|
| T |
25469505 |
tttagcttgttctaagatgagtgagctgaaatttcacacttttgcgaagaatgtccaacgggttactttgaaaactctttcatcaaagttccttgtgatt |
25469604 |
T |
 |
| Q |
202 |
ccatttggttcttctgaactgaacctctcaagatagaaatttgcat |
247 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
25469605 |
ccatttggttttt-----ctgaacctctcgagatagaaatttgcat |
25469645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 250
Target Start/End: Original strand, 32739955 - 32740163
Alignment:
| Q |
37 |
ggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaagctggaattac |
136 |
Q |
| |
|
||||| || ||||| ||||||||| |||| ||| || |||||||||| |||||||||| ||||||||||||| |||||||| | |||| ||| |||||| |
|
|
| T |
32739955 |
ggaaatgctgtcaatatttgctgctttggtccagacgcttctgagtctgagtatagttacgatatattggctacgtctcagatatgtaaactgaaattac |
32740054 |
T |
 |
| Q |
137 |
actcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaactgaacctctcaagata |
236 |
Q |
| |
|
|||||||||| ||||||||||||| | |||| |||| || |||| ||||| ||||||| |||||||||||| |||||| |||||||||||||| || |
|
|
| T |
32740055 |
actcttttgccaagaatgtccaacagattactttagcaaatctttcatcaaagttccttgtgattccatttagttctt-----ctgaacctctcaagtta |
32740149 |
T |
 |
| Q |
237 |
gaaatttgcataac |
250 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32740150 |
gaaatttgcataac |
32740163 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 32767733 - 32767971
Alignment:
| Q |
5 |
tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt |
104 |
Q |
| |
|
||||||| || || |||| |||||| ||||| ||||| || ||| | |||||||||||||| || ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
32767733 |
tatttattctcaataatagtactatacttttaggaaatgcagtctatatttgctgcattggtcctaactcctctgagtccgagtatagttatgatatatt |
32767832 |
T |
 |
| Q |
105 |
ggctaagtctcagacaagtaagctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattcca |
204 |
Q |
| |
|
||||| |||||||||| | || ||| ||||||| ||||||| ||| |||||||| | | |||| |||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
32767833 |
ggctaggtctcagacatgcaaactgaaattacagtcttttgtgaaaaatgtccagcagtttactttagcaactcttccatcagagctccttgtgattcca |
32767932 |
T |
 |
| Q |
205 |
tttggttcttctgaactgaacctctcaagatagaaatttgcata |
248 |
Q |
| |
|
|||| |||||||||| | |||||| |||||||||||||| |
|
|
| T |
32767933 |
gttggctcttctgaac-----cactcaagctagaaatttgcata |
32767971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 32762859 - 32763077
Alignment:
| Q |
31 |
cttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaagctgg |
130 |
Q |
| |
|
||||| ||||| || ||||| ||||||||| | || || |||||||||||||| |||||||||||||||||||||||| ||||||| | | || ||| |
|
|
| T |
32762859 |
cttttaggaaatgcagtcaatatttgctgcctcggtcctaactcttctgagtctgagtatagttatgatatattggctagctctcagatatgcaaactga |
32762958 |
T |
 |
| Q |
131 |
aattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaactgaacctctc |
230 |
Q |
| |
|
||||||| ||||||| |||||| |||||||| ||| | |||| ||||||| |||||||||| || ||||||||||||| ||||| | ||||||||| |
|
|
| T |
32762959 |
aattacagtcttttgtgaagaacgtccaacgtgttgctttagcaactctttcatcagagtttcttgtgattccatttgcttctt-----ccgaacctctc |
32763053 |
T |
 |
| Q |
231 |
aagatagaaatttgcataaccccc |
254 |
Q |
| |
|
||| |||| ||||||||||||||| |
|
|
| T |
32763054 |
aagctagatatttgcataaccccc |
32763077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 28474719 - 28474937
Alignment:
| Q |
31 |
cttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaagctgg |
130 |
Q |
| |
|
||||||||||| | ||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||||||| | | || ||| |
|
|
| T |
28474719 |
cttttgggaaatggagtcaatatttgctgcattggtcctaactcttctgagtccgagtatagttatgatatattggctaggtctcagatatgcaaactga |
28474818 |
T |
 |
| Q |
131 |
aattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaactgaacctctc |
230 |
Q |
| |
|
||||| ||||||| |||||| |||||| |||| | |||| ||||| | |||||||||| || ||||||||||||||||||| | ||||||||| |
|
|
| T |
28474819 |
ctttacagtcttttgtgaagaacgtccaagaggttgctttagcaactccttcatcagagttgcttgtgattccatttggttctt-----ccgaacctctc |
28474913 |
T |
 |
| Q |
231 |
aagatagaaatttgcataaccccc |
254 |
Q |
| |
|
||| |||| ||||| ||||||||| |
|
|
| T |
28474914 |
aagctagatatttgtataaccccc |
28474937 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 32652048 - 32651863
Alignment:
| Q |
35 |
tgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaagctggaatt |
134 |
Q |
| |
|
||||||| || ||||| |||||| ||||||| ||||||| || ||||| | |||||||||||||||||||||| |||| ||| | || ||| |||| |
|
|
| T |
32652048 |
tgggaaatgcagtcaatatttgcggcattggtccaaacttttacgagtctgaatatagttatgatatattggctaggtctgagatgtgcaaactgaaatt |
32651949 |
T |
 |
| Q |
135 |
acactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaac |
220 |
Q |
| |
|
||| ||||||| ||| || ||||||| ||||| | || || |||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32651948 |
acagtcttttggtaaggatttccaacgtgttacttcagcaaatctttcatcagagttccttgtgattccatttggttcttctgaac |
32651863 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 32858129 - 32858297
Alignment:
| Q |
52 |
atttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaagctggaattacactcttttgcgaaga |
151 |
Q |
| |
|
||||| |||||||| || ||||||| ||| || |||||||||| |||||||| ||||| |||||||| | | || || ||||||| ||||||| ||| |
|
|
| T |
32858129 |
atttgttgcattggtcctaactcttgtgaatccaagtatagttctgatatatcggctaggtctcagatatgcaaattgaaattacagtcttttgtgaaat |
32858228 |
T |
 |
| Q |
152 |
atgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaac |
220 |
Q |
| |
|
| ||||||||| |||| |||| ||||||| ||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
32858229 |
acgtccaacggtttactttagcaactctttcatcagagtgccttgtgattccatttggttcttttgaac |
32858297 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 32656308 - 32656093
Alignment:
| Q |
30 |
gcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaagctg |
129 |
Q |
| |
|
|||||||||||| || |||| |||||||| ||||| |||||||||| ||||| | | |||||| |||||||||| || |||||||| | || || |
|
|
| T |
32656308 |
gcttttgggaaatgctatcaatatttgctgtattggtccaaactctttcgagtctgaatgtagttacgatatattggttaggtctcagatgtgcaacttg |
32656209 |
T |
 |
| Q |
130 |
gaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaactgaacctct |
229 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||| ||||| ||||||| | || ||||| || ||||||||||||||||||| |||| |||| |
|
|
| T |
32656208 |
aaattacagtctttcgcgaagaatgtccaatcggttgtattagcaactctttcgtcggagttgcttgtgattccatttggttctt-----ttgaagctct |
32656114 |
T |
 |
| Q |
230 |
caagatagaaatttgcataac |
250 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
32656113 |
caagctagaaatttgcataac |
32656093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 32662194 - 32662009
Alignment:
| Q |
31 |
cttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaagctgg |
130 |
Q |
| |
|
||||||||||| || |||| |||||||| ||||| |||||||||| ||||| | ||||| ||| |||||||||||| |||||||| | || ||| |
|
|
| T |
32662194 |
cttttgggaaatgctatcaatatttgctgtattggtccaaactctttcgagtctgaatatagatattatatattggctaggtctcagatgtgcaaactga |
32662095 |
T |
 |
| Q |
131 |
aattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttct |
216 |
Q |
| |
|
|||| || |||||||| ||| |||| ||||| ||| | || | ||||| | | ||||||||||| |||||||||||||||||||| |
|
|
| T |
32662094 |
aattgcagtcttttgcaaaggatgttcaacgtgttgcgttcgcaactccttcctcagagttccttttgattccatttggttcttct |
32662009 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 25477494 - 25477535
Alignment:
| Q |
213 |
ttctgaactgaacctctcaagatagaaatttgcataaccccc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25477494 |
ttctgaactgaacctctcaagatagaaatttgcataaccccc |
25477535 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 32710150 - 32710227
Alignment:
| Q |
133 |
ttacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggt |
210 |
Q |
| |
|
||||| |||||| |||||||||||||||| |||| |||| | |||| ||||| |||||||||||||||||||||| |
|
|
| T |
32710150 |
ttacagtcttttccgaagaatgtccaacgcgttagtttagcagatctttcatcaacgttcctcgtgattccatttggt |
32710227 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 7970159 - 7969915
Alignment:
| Q |
5 |
tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt |
104 |
Q |
| |
|
||||||| ||||| || ||||||||| ||||||||| || ||||| |||||||||||||| || |||||||||| ||| |||||||||||||||||| |
|
|
| T |
7970159 |
tatttattctaaataacaatactatgagtttgggaaaagcagtcaatatttgctgcattggtcctaactcttctgggtccgagtatagttatgatatatc |
7970060 |
T |
 |
| Q |
105 |
ggctaagtctcagacaagtaagctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattcca |
204 |
Q |
| |
|
|||||||||| ||| | | || ||| ||||||| |||||||||||||| ||||||| | |||| |||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
7970059 |
ggctaagtctgagatatgcaaactgaaattacagtcttttgcgaagaacgtccaacagtttactttagcaactctttcatcagagttccttgtgattcca |
7969960 |
T |
 |
| Q |
205 |
tttggttcttctgaactgaacctctcaagatagaaatttgcataaccccc |
254 |
Q |
| |
|
||| |||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
7969959 |
tttcgttcttct-----gaacctctcaagctagacatttgcataaccccc |
7969915 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 37576952 - 37577196
Alignment:
| Q |
5 |
tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt |
104 |
Q |
| |
|
||||||| || || |||| |||||||||||| ||||| || |||| ||||| |||||| | ||||| |||||| ||| ||| | ||||||||||||| |
|
|
| T |
37576952 |
tatttattctcaataatagtactatgctttttggaaatgcaatcaatatttgttgcattagtccaaagtcttctcagtacgagtgtggttatgatatatt |
37577051 |
T |
 |
| Q |
105 |
ggctaagtctcagacaagtaagctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattcca |
204 |
Q |
| |
|
||||| ||||| || | || | | |||| || || |||||||||||||| |||||| |||| ||| ||||||| ||| ||||||||| ||||||||| |
|
|
| T |
37577052 |
ggctagatctcaagcatgcaaaccgaaatttcagtcgtttgcgaagaatgtgcaacggtttactttatcaactctttcattagagttccttgtgattcca |
37577151 |
T |
 |
| Q |
205 |
tttggttcttctgaactgaacctctcaagatagaaatttgcataaccccc |
254 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
37577152 |
tttggttctt-----ctgaacctctcgagctagaaatttgcatatccccc |
37577196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 17583355 - 17583577
Alignment:
| Q |
27 |
tatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagtaag |
126 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||| || |||||||||||||| | |||||||||||||||||||||| |||||||| | || |
|
|
| T |
17583355 |
tatgcttttgggaaatgcagtcaatctttgctgcattggtcctaactcttctgagtccgactatagttatgatatattggctaggtctcagatatccaaa |
17583454 |
T |
 |
| Q |
127 |
ctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaactgaacc |
226 |
Q |
| |
|
||| ||||||| ||||| | |||||| ||||||| |||| | |||| ||||||| |||||||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
17583455 |
ctgaaattacagtctttcgtgaagaacgtccaacaggttcctttagcaactctttcatcagagttgcttgtgattccatttggttctt-----ctgaacc |
17583549 |
T |
 |
| Q |
227 |
tctcaagatagaaatttgcataaccccc |
254 |
Q |
| |
|
||||||| |||| ||||||||||||||| |
|
|
| T |
17583550 |
tctcaagctagatatttgcataaccccc |
17583577 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 17591260 - 17591482
Alignment:
| Q |
25 |
actatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagta |
124 |
Q |
| |
|
|||| |||||||||||| || ||||| ||||||||||||| || |||||||||||||| || |||| ||||||||||||||||| |||||||| | | |
|
|
| T |
17591260 |
actacgcttttgggaaatgcagtcaatctttgctgcattggtcctaactcttctgagtccaactataattatgatatattggctaggtctcagaattgca |
17591359 |
T |
 |
| Q |
125 |
agctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaactgaa |
224 |
Q |
| |
|
||| ||||||| |||||||||||||| ||||||| ||||| |||| ||||||| |||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
17591360 |
tactgaaattacagtcttttgcgaagaacgtccaacaagttactttagcaactctttcatcagagttgcttgtgattccatttggttctt-----ctgaa |
17591454 |
T |
 |
| Q |
225 |
cctctcaagatagaaatttgcataaccc |
252 |
Q |
| |
|
||||||||| |||| ||||||||||||| |
|
|
| T |
17591455 |
cctctcaagctagatatttgcataaccc |
17591482 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 16756838 - 16757034
Alignment:
| Q |
24 |
tactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagt |
123 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| ||| |||| |||| |||||| ||| |||||||||||||||||| ||||| |||||||| | | |
|
|
| T |
16756838 |
tactatgcttttgggaaatgcagtcaatatttgttgctttggtccaactgcttctgtgtccgagtatagttatgatatatcggctaggtctcagaaatgc |
16756937 |
T |
 |
| Q |
124 |
aagctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaac |
220 |
Q |
| |
|
|| ||| |||||||||| ||||| |||||| | || | ||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
16756938 |
aaactgaaattacactcgtttgcaaagaatttgcatcaagttactttagcaactctttcatcagagttccttgtgattccaattggttcttctgaac |
16757034 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 16752334 - 16752554
Alignment:
| Q |
25 |
actatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatattggctaagtctcagacaagta |
124 |
Q |
| |
|
|||| ||||||||| || || ||||| ||||||||| |||| ||||| |||| ||||| |||||||||||| ||| ||| | |||||||| | | | |
|
|
| T |
16752334 |
actacgcttttggggaatgcagtcaatatttgctgctttggtccaaatgcttccgagtccgagtatagttatggtatcaaggccaggtctcagagatgca |
16752433 |
T |
 |
| Q |
125 |
agctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattccatttggttcttctgaactgaa |
224 |
Q |
| |
|
| ||| ||||||||||||||| | ||||||||||| |||||| |||| ||||||| || |||||||||| |||||||| |||||||| | || |
|
|
| T |
16752434 |
aactgaaattacactcttttgtaacgaatgtccaacaggttactttaggaactctttcaccagagttccttatgattccaaatggttctt-----ccaaa |
16752528 |
T |
 |
| Q |
225 |
cctctcaagatagaaatttgcataac |
250 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
16752529 |
cctctcaagctagaaatttgcataac |
16752554 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 21524383 - 21524630
Alignment:
| Q |
5 |
tatttatcctaaaaaataatactatgcttttgggaaacgcggtcaacatttgctgcattggaccaaactcttctgagtcaaagtatagttatgatatatt |
104 |
Q |
| |
|
||||||| || || |||| ||||||| ||| ||||| || || || ||||| |||||||| | ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
21524383 |
tatttattctcaataatagtactatgagtttaggaaatgcagttaatatttgttgcattggtcataactcttttgagtccaagtatagttatgatatatt |
21524482 |
T |
 |
| Q |
105 |
ggctaagtctcagacaagtaagctggaattacactcttttgcgaagaatgtccaacgggttacattagaaactcttccatcagagttcctcgtgattcca |
204 |
Q |
| |
|
||||| |||| ||| | | || || ||||||| ||||||| ||| | || ||||| |||| ||| ||||||| ||| ||||| ||| ||||||||| |
|
|
| T |
21524483 |
ggctaggtctgagatatgcaaattgaaattacagtcttttgtgaaatacttctaacggtttactttattaactctttcatgagagtgccttgtgattcca |
21524582 |
T |
 |
| Q |
205 |
tttggttcttctgaactgaacctctcaagatagaaatttgcataaccccc |
254 |
Q |
| |
|
|||||||||| ||||| ||||| ||| |||| ||||||||||||||| |
|
|
| T |
21524583 |
tttggttcttttgaac--cacctcataagctagatatttgcataaccccc |
21524630 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University