View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_low_29 (Length: 251)
Name: NF11755_low_29
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 26967573 - 26967402
Alignment:
| Q |
1 |
aaatggagaagcatatggttagaaattgattccatgatggttatacatgatttcaaaagtcgatattcagtgccttgggaagtaagaaacatatggaaca |
100 |
Q |
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| T |
26967573 |
aaatggagaagcatatggttagaaattgattccatgatggttatacatgattt-aaaagtcgatattcagtgccttgggaagtaagaaacatatggaaca |
26967475 |
T |
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| Q |
101 |
actacattcttcaaaacaaatcgatatgaatttcattgaatcacacatttataaagaagtaaatagttgtgtt |
173 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26967474 |
actacattcttcaaaacatatcgatatgaatttcattgaatcacacatttataaagaagtaaatagttgtgtt |
26967402 |
T |
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Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 34673841 - 34673671
Alignment:
| Q |
1 |
aaatggagaagcatatggttagaaattgattccatgatggttatacatgatttcaaaagtcgatattcagtgccttgggaagtaagaaacatatggaaca |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
34673841 |
aaatggagaagtatatggttagaaattgattccatgatggttatacatgatttcaaaagtcgagattgagtgccttgggaagtaagaaacataaggaaca |
34673742 |
T |
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| Q |
101 |
actacattcttcaaaacaaatcgatatgaatttcattgaatcacacatttataaagaagtaaatagttgtg |
171 |
Q |
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|||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
34673741 |
actacattcttcaaaacatatccatatgaagttcattatatcacacatttataaagaagtaaatagttgtg |
34673671 |
T |
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