View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_low_36 (Length: 238)
Name: NF11755_low_36
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 13711742 - 13711958
Alignment:
| Q |
8 |
acactagatatacgtctaggaattttagatacatatcacatcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaaaatt |
107 |
Q |
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| T |
13711742 |
acactagctatacgtctaggaattctagatacatatcacatcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaaaatt |
13711841 |
T |
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| Q |
108 |
gggttctctccgttggttttgggcgaagagtatgaaaaatggtcataatccgtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagc |
207 |
Q |
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| T |
13711842 |
gggttctctccattggttttgggcgaagagtataaaaaatggtcataatccgtaaaagtctctcattctgcaaaatatatgctgcaaatcggaaatcagc |
13711941 |
T |
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| Q |
208 |
ttccacaacttcatagt |
224 |
Q |
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||||||||||||||||| |
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| T |
13711942 |
ttccacaacttcatagt |
13711958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 58 - 210
Target Start/End: Complemental strand, 17392832 - 17392680
Alignment:
| Q |
58 |
cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcataatc |
157 |
Q |
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| T |
17392832 |
cttacatgtgggagacattcttggacaggaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatgatgaatggtcataact |
17392733 |
T |
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| Q |
158 |
cgtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttc |
210 |
Q |
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| T |
17392732 |
tgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttc |
17392680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 17384121 - 17383955
Alignment:
| Q |
58 |
cttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaatggtcataatc |
157 |
Q |
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| T |
17384121 |
cttacatgagggagagatccttggacaagaggataaattttctaaaaattgagggctctccattggatttgggtgaagagtatggcaaatggtcata-tc |
17384023 |
T |
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| Q |
158 |
cgtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatagtg |
225 |
Q |
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| T |
17384022 |
tgcaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcccaagcttcatagtg |
17383955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 19653546 - 19653679
Alignment:
| Q |
47 |
atcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaa |
146 |
Q |
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| T |
19653546 |
atcacttccagcttacacgtgggcgagattgtaggacaggaggataaatcctttgaaaaatgggggctccccgttggtttcaggtcaagagtacggaaaa |
19653645 |
T |
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| Q |
147 |
tggtcataatccgtaaaagtctcgcattctgcaa |
180 |
Q |
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| T |
19653646 |
tggtcataacttgtaagagtctcgcattcagcaa |
19653679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 17377653 - 17377602
Alignment:
| Q |
159 |
gtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttc |
210 |
Q |
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| T |
17377653 |
gtaaaagtctcgcatttcgcaaaatatatgttgcgaatcgaaaatcagcttc |
17377602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 15785073 - 15784897
Alignment:
| Q |
47 |
atcaattccaacttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgttggttttgggcgaagagtatgaaaaa |
146 |
Q |
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| T |
15785073 |
atcaattccagcttacatgtgggagagatttttggacaggaggataagtcttctaaattttttgggctctcaattggttttggggtaagagtacggcaaa |
15784974 |
T |
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| Q |
147 |
tggtcataatccgtaaaagtctcgcattctgcaagatatatgctgcgaatcggaaatcagcttccacaacttcatag |
223 |
Q |
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| T |
15784973 |
tggtcataacctgtaaaagtcttgcattctttaaaatgtaagatgcgaatcgaaaatcagcctccatagcttcatag |
15784897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 32224314 - 32224376
Alignment:
| Q |
59 |
ttacatgtaggagagattgttggacaggaggataaatcatctaaaaattgggttctctccgtt |
121 |
Q |
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| T |
32224314 |
ttacatgttggagagatccttccacatgaggataaatcatctaaaaattggggactctccgtt |
32224376 |
T |
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