View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11755_low_38 (Length: 238)
Name: NF11755_low_38
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_38 |
 | |
|
| [»] scaffold0189 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0189 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 29824 - 29771
Alignment:
| Q |
170 |
ccattttcaagtagtagcagtaagaagttgaagggaggttatttgtgacataag |
223 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29824 |
ccattttcaagtagtagtagtaagaagttgaagggaggttatttgtgacataag |
29771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 29866 - 29837
Alignment:
| Q |
1 |
tttctatttttgcaaaaccgtaacctcttt |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
29866 |
tttctatttttgcaaaaccgtaacctcttt |
29837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University