View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_low_8 (Length: 426)
Name: NF11755_low_8
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 250457 - 250855
Alignment:
| Q |
1 |
gttaaaaaatacagataaatcataaggtattcttgagggttcaaccttcaattctcggaagaattcatgttaataactgattatccttgaggcatgatta |
100 |
Q |
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| T |
250457 |
gttaaaaaatacagataaatcataaggtattcttgagggttcaacctttaattctcggaagaattcatgttaataactgattatccttgaggcatgatta |
250556 |
T |
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| Q |
101 |
ttagtagttgtcgtcgaaaacagagtttgtatcaactggttttaactatttctatcattatcaagggcgaaaattccatctgtttattagtatcatttat |
200 |
Q |
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| T |
250557 |
ttagtagttttcgtcgaaaacagagtttgtatcaactggttttaactatttctatcattatcaagggcgaaaattccatctgtttattagtatcatttat |
250656 |
T |
|
| Q |
201 |
cactaaatgcacgcattgaaatgaagtcaatgaatagttacatcataggaccagtaaattaccccgtcagaaatgaattcttggtttgcaaaatcaagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250657 |
cactaaatgcacgcattgaaatgaagtcaatgaatagttacatcataggaccagtaaattaccccgtcagaaatgaattcttggtttgcaaaatcaagtt |
250756 |
T |
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| Q |
301 |
atactccaatcaaacttgaaaaaagaaatttgtaaagagactaaaagggtacccccaatgagaacaagaaaattaaatgtgttcatttttacacctatg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250757 |
atactccaatcaaacttgaaaaaagaaatttgtaaagagactaaaagggtacccccaatgagaacaagaaaattaaatgtgttcatttttacacctatg |
250855 |
T |
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