View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11755_low_9 (Length: 419)
Name: NF11755_low_9
Description: NF11755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11755_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 29177226 - 29176835
Alignment:
| Q |
1 |
ataggttcaagtaagggaatgtcaaaaaaggcaattagattcacaccataacgacaaagaattaattaattaatcaaccacgttcaaacgtaactactca |
100 |
Q |
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| T |
29177226 |
ataggttcaattaagggaatgtcaaaaaaggcaattagattcacaccataacgacaaagaattaattaattaatcaaccactttcaaacgtaaccactca |
29177127 |
T |
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| Q |
101 |
acttgtgaatannnnnnnaaaaatataatgatattttatatgccatgatccgtttcttaatactattattttatcataacaaatcaaataaggttcaaaa |
200 |
Q |
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| T |
29177126 |
acttgtgaatatttttttaaaaatataatgatattttatatgccatgatctgtttctgaata------ttttatcataacaaatcaaataaggatcaaaa |
29177033 |
T |
|
| Q |
201 |
gcaaaaagtaaggactaaggagggtatacctgtagctcagtggtgactgggtattcatccatgtcaacgtagttcttgttaatggaagccatgatgagtt |
300 |
Q |
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| T |
29177032 |
gcaaaaagtaagga-------gggtatacctgtagctcagtggtgactgggtattcatccatgtcaacgtagttcttgttaatggaagccatgatgagtt |
29176940 |
T |
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| Q |
301 |
tatcacactcaggctccatccatgttgtcacaaaggatgccaaattcaatctagggtttccatcaagcatcaattcatcgtttattatttggtatgctgc |
400 |
Q |
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| T |
29176939 |
tatcacactcaggctccatccatgttgtcacaaaggatgccaaattcaatctagggtttccatcaagcatcaattcatcgtttattatttggtatgctgc |
29176840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 228 - 385
Target Start/End: Complemental strand, 32893680 - 32893523
Alignment:
| Q |
228 |
acctgtagctcagtggtgactgggtattcatccatgtcaacgtagttcttgttaatggaagccatgatgagtttatcacactcaggctccatccatgttg |
327 |
Q |
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| T |
32893680 |
acctggagctcagtggtgacaggatattcatccatgtcgacgtagtttttgttaattgaagccatgatgagtttgtcgcattctggttccatccatgtgg |
32893581 |
T |
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| Q |
328 |
tcacaaaggatgccaaattcaatctagggtttccatcaagcatcaattcatcgtttat |
385 |
Q |
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| T |
32893580 |
tgacgaatgatgcaagattcagcctagggttaccatcaagcatcaactcatcgtttat |
32893523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 403
Target Start/End: Original strand, 27859635 - 27859810
Alignment:
| Q |
228 |
acctgtagctcagtggtgactgggtattcatccatgtcaacgtagttcttgttaatggaagccatgatgagtttatcacactcaggctccatccatgttg |
327 |
Q |
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| T |
27859635 |
acctgaagctcagtagtgacaggatactcatccatatcaacataattcttgttaagtgaatccatgataagcttatcacactcaggttccatccaagtag |
27859734 |
T |
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| Q |
328 |
tcacaaaggatgccaaattcaatctagggtttccatcaagcatcaattcatcgtttattatttggtatgctgcatc |
403 |
Q |
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| T |
27859735 |
tcacaaatgaagccaagttaagccttggttttccatctaacatcaactcatcatttattatctgatatgctgcatc |
27859810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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