View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_high_14 (Length: 240)
Name: NF11756_high_14
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_high_14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 38682945 - 38682765
Alignment:
| Q |
18 |
ttgggaaggtgaagtgcaaagattgctggaatgtttgagttctcttnnnnnnn-ta-atatcagatattgcatttctgcaaagaatctacacgacagtgg |
115 |
Q |
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| T |
38682945 |
ttgggaaggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaaatatatatcagatattgcatttctgcaaagaatctacacgacagagg |
38682846 |
T |
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| Q |
116 |
ttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatct |
196 |
Q |
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| T |
38682845 |
ttcgacgtcacgaatcaccacaatattgtgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatct |
38682765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 52023761 - 52023940
Alignment:
| Q |
18 |
ttgggaaggtgaagtgcaaagattgctggaatgtttgagttctcttnnnnnnntaatatcagatattgcatttctgcaaagaatcta-cacgacagtggt |
116 |
Q |
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| T |
52023761 |
ttgggaaggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaa-aatatcagatattgcatttctgcaaagaatctatcacgacagaggt |
52023859 |
T |
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| Q |
117 |
tcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatgtatctt |
197 |
Q |
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| T |
52023860 |
tcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatacatgtatctt |
52023940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 40013051 - 40013280
Alignment:
| Q |
18 |
ttgggaaggtgaagtgcaaagattgctggaatgtttgagttctcttnnnnnnntaata--tcagatattgcatttctgcaaagaatctacacgacagtgg |
115 |
Q |
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| T |
40013051 |
ttgggaaggtgaagtgcaaagattgatggaatgtttgagttctcttaaaaaaaaaaaaaatcagatattgcatttctgcagagaatctacacgacagagg |
40013150 |
T |
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| Q |
116 |
ttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtata---tatgtatcttct-nnnnnnntctc- |
210 |
Q |
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| T |
40013151 |
ttcgacgtcacaaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatagtatgtatcttctaaaaaaaatctca |
40013250 |
T |
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| Q |
211 |
aagtttatgtgtggggagacagaaaagtct |
240 |
Q |
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| T |
40013251 |
aagtctatgtgtggggagacagaaaagtct |
40013280 |
T |
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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 7858057 - 7858162
Alignment:
| Q |
92 |
tgcaaagaatctacacgacagtggttcgacgtcacgaatcaccacaatattttgtatctagcatgccaatgaaggaaatgtcttttcaaaagtatatatg |
191 |
Q |
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| T |
7858057 |
tgcaaagaacctacatgacatatgttctacgtcacgaatcaccacgatattttgtatccagcatgccaatgaagaaaatgtcttttcaaaagtgtatatg |
7858156 |
T |
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| Q |
192 |
tatctt |
197 |
Q |
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|||||| |
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| T |
7858157 |
tatctt |
7858162 |
T |
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