View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_high_6 (Length: 444)
Name: NF11756_high_6
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 186 - 426
Target Start/End: Original strand, 9678483 - 9678730
Alignment:
| Q |
186 |
actactattttgattcatatgatgtaagctttcattttgttacacattttcttatataattctattacatcttccatcaaaaatcacattcacaaactta |
285 |
Q |
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| T |
9678483 |
actactatttggattcatatgatgtaagctttcattttgttacacattttcttatataattctattacatcttccatcataaatcacattcacaaactta |
9678582 |
T |
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| Q |
286 |
ttattcaatttactt-------ctaatacattgtctcatctaaacttataattgcaaaacttcagattctctttgtgagtgcaatgaatttcattcttgc |
378 |
Q |
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| T |
9678583 |
ttattcaatatacttctaacttctaatacattgtctcatctaaacttataattgcaaaacttcagattctctttgtgagtgcaatgaatttcattcttgc |
9678682 |
T |
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| Q |
379 |
tttgaaattctgaactttataaagttaaaagtgagtttaatcaagttg |
426 |
Q |
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| T |
9678683 |
tttgaaattctgaactttataaagttaaaagtgagtttaatcaagttg |
9678730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 9678353 - 9678456
Alignment:
| Q |
86 |
cacctttaaattcctcactttactctctttgtcacaaccagaagaagaagaaaacaaataggttgaagaacttcaagtacaagagttatggaaccatatc |
185 |
Q |
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| T |
9678353 |
cacctttaaattcctcactttactctctttgtcacaaccagaagaagaagaaaacaaataggttgaagaacttcaagtacaagagttatggaaccatatc |
9678452 |
T |
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| Q |
186 |
acta |
189 |
Q |
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|||| |
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| T |
9678453 |
acta |
9678456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9678262 - 9678327
Alignment:
| Q |
1 |
atttcccatcataggccataaccaaagcataaatgtaaaaagcttcaatcatcacccccacactca |
66 |
Q |
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| T |
9678262 |
atttcccatcataggccataaccaaagcataaatgtaaaaagcttcaatcatcacccccacactca |
9678327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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