View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_high_8 (Length: 415)
Name: NF11756_high_8
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_high_8 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 28807 - 29197
Alignment:
| Q |
20 |
ccgacttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaaga |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28807 |
ccgacttctgatatcctttgtccatcttttcaatatgtagtgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaaga |
28906 |
T |
|
| Q |
120 |
tacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28907 |
tacccattatactcaaacaaacgacatatgcaagaaattttctctttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattg |
29006 |
T |
|
| Q |
220 |
taaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtata |
319 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007 |
taaaagaggtgagctgactatcttcattccttttcttgacatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtata |
29106 |
T |
|
| Q |
320 |
aatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatctctgcttct |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29107 |
aatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttct |
29197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 275917 - 276307
Alignment:
| Q |
20 |
ccgacttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275917 |
ccgacttctgatatcctttgtccatcttttcaatatgtagtgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaaga |
276016 |
T |
|
| Q |
120 |
tacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattg |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276017 |
tacccattatactcaaacaaacaacatatgcaagaaattttctctttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattg |
276116 |
T |
|
| Q |
220 |
taaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtata |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276117 |
taaaagaggtgagctgactatcttcattccttttcttaagatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtata |
276216 |
T |
|
| Q |
320 |
aatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatctctgcttct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
276217 |
aatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttct |
276307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 26396522 - 26396912
Alignment:
| Q |
20 |
ccgacttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaaga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396522 |
ccgacttctgatatcctttgtccatcttttcaatatgtagtgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaaga |
26396621 |
T |
|
| Q |
120 |
tacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattg |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26396622 |
tacccattatactcaaacaaacaacatatgcaagaaattttctctttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattg |
26396721 |
T |
|
| Q |
220 |
taaaagaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtata |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396722 |
taaaagaggtgagctgactatcttcattccttttcttaagatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtata |
26396821 |
T |
|
| Q |
320 |
aatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatctctgcttct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26396822 |
aatcattgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagcatgcatttctgcttct |
26396912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 19219115 - 19219213
Alignment:
| Q |
98 |
catcaatgaatgtctacaaagatacccattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttc |
196 |
Q |
| |
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||||||||||||||||| |||||| |||||| ||||||| ||| |||||| || | |||| ||| ||||||||||||||||||||||| ||||| |
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| T |
19219115 |
catcaatgaatgtctactaagatatccattaaactcaaataaatgacataaataatatatttcagcttttgatgcatcccactctacaacaaactcttc |
19219213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 196
Target Start/End: Original strand, 19216995 - 19217023
Alignment:
| Q |
168 |
gatgcatcccactctacaacaaattcttc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
19216995 |
gatgcatcccactctacaacaaattcttc |
19217023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 394
Target Start/End: Complemental strand, 56109513 - 56109143
Alignment:
| Q |
24 |
cttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaagatacc |
123 |
Q |
| |
|
||||| |||||||| ||||||||| | || || || |||||||||||| || ||| |||| | ||||| |||||||||||||||||||||||||||| |
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| T |
56109513 |
cttctaatatccttggtccatcttcttaaaatatagtgtgatgggacaacacagacaccaacagcttggaatgccatcaatgaatgtctacaaagatacc |
56109414 |
T |
|
| Q |
124 |
cattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaa |
223 |
Q |
| |
|
||||||||||||| || ||||||| || || |||| ||| ||||| |||| |||||||||| ||| || || | || ||||||||| |||||||| |
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| T |
56109413 |
cattatactcaaaaaagcgacatagacacgatatttccttcttcgagacatcacactctacaataaactcgtcatttttatgaaagtcgaaaattgtaaa |
56109314 |
T |
|
| Q |
224 |
agaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatc |
323 |
Q |
| |
|
|| || || |||| | || | |||| | | | |||||||||||||||| || ||||||||| || || ||||| | |||||| ||||| ||| |
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|
| T |
56109313 |
agtggcagtaagattatcattatgctctttcacaatacggcatccagataatcccaaaacttcaacttgaaatttcttgaagatttcatgtgtatatatc |
56109214 |
T |
|
| Q |
324 |
attgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagc |
394 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||| ||||| || |||||||| ||||||||||| |
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|
| T |
56109213 |
atcgacatttgcttctcaaaaggtgatggagtcctaagaacaggttgcttgtgccatgtcttaaaatcagc |
56109143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 24 - 394
Target Start/End: Complemental strand, 26015279 - 26014910
Alignment:
| Q |
24 |
cttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaagatacc |
123 |
Q |
| |
|
||||| |||||||| ||||||||| | || || || |||||||||||| || ||| |||| | ||||| |||||||||||||||||||||||||||| |
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|
| T |
26015279 |
cttctaatatccttggtccatcttcttaaaatatagtgtgatgggacaacacagacaccaacaacttggaatgccatcaatgaatgtctacaaagatacc |
26015180 |
T |
|
| Q |
124 |
cattatactcaaacaaacgacatatgcaagaaattttctttttcgatgcatcccactctacaacaaattcttccctatttccaaagtcgaatattgtaaa |
223 |
Q |
| |
|
||||||||||||| || ||||||| || || |||| ||| ||||| |||| ||||||| || ||| || || | || ||||||||| |||||||| |
|
|
| T |
26015179 |
cattatactcaaaaaagcgacatagacacgatatttccttcttcgagacatcacactctagaataaactcgtcatttttatgaaagtcgaaaattgtaaa |
26015080 |
T |
|
| Q |
224 |
agaggtgagctgactatcttcattccttttcttgagatgacatccagataatcccataatttcaacttggaactttttgaatacttcatgcgtataaatc |
323 |
Q |
| |
|
|| || || |||| | || | |||| | | |||||||||||||||||| || ||||||||| || || |||| | || ||| ||||| ||| |
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|
| T |
26015079 |
agtggcagtaagattatcattatgctctttcacaatacgacatccagataatcccaaaacttcaacttgaaatttcttgacga-tttatgtgtatatatc |
26014981 |
T |
|
| Q |
324 |
attgacatttgcttctcaaaaggtgatggagttttaagaactggttgtttatgccatgtattaaaatcagc |
394 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||| |||| || |||||||| ||||||||||| |
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|
| T |
26014980 |
ctcgacatttgcttctcaaaaggtgatggagtcctaagaacacgttgcttgtgccatgtcttaaaatcagc |
26014910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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