View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11756_high_9 (Length: 392)
Name: NF11756_high_9
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 40261420 - 40261205
Alignment:
| Q |
18 |
aatttcactaatcctcacactcacattttctcttatcca---tactactag-caatcttctgccactattgcaaatgcattcacggaa---------taa |
104 |
Q |
| |
|
||||||||| |||| |||||||||||| ||| ||||||| ||||||| | ||||||||| ||||| |||||||||||||||| ||| ||| |
|
|
| T |
40261420 |
aatttcactcatccccacactcacattctcttttatccaccatactactgggcaatcttcttccactgttgcaaatgcattcaccgaaattttattttaa |
40261321 |
T |
|
| Q |
105 |
ttaagtgttaatttgctgacagataattatgtcctttattttatttacacgtgatgaaagtatttctgtccaatgtgaagagatacaatttatatttgcc |
204 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||||| |||||| |
|
|
| T |
40261320 |
ttaaccgttaatttgctgacagacaattaagtcctttatttgatttacacctgatgaaagta-ttctgtagaatgtgaagagatacaattcatatttctt |
40261222 |
T |
|
| Q |
205 |
agcccaaaatcctcaac |
221 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
40261221 |
agcccaaaattctcaac |
40261205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 34997733 - 34997672
Alignment:
| Q |
295 |
gaccattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttttc |
356 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34997733 |
gaccattagattagagaggagtatcgattttatcatgggttgtgcacactatattatttttc |
34997672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 34367418 - 34367476
Alignment:
| Q |
296 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
354 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
34367418 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
34367476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 38320476 - 38320537
Alignment:
| Q |
295 |
gaccattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttttc |
356 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| || |||||||||||||||||||||||| |
|
|
| T |
38320476 |
gaccattaaattagagaggagtaccgattttatcataagttgtgcacactatattatttttc |
38320537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 37141916 - 37141974
Alignment:
| Q |
296 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
354 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
37141916 |
accattaaattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
37141974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 17979105 - 17979047
Alignment:
| Q |
296 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
354 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
17979105 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
17979047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 5505212 - 5505151
Alignment:
| Q |
295 |
gaccattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttttc |
356 |
Q |
| |
|
|||||||| ||| |||||||||| |||||| || |||||||||||||||||||||||||||| |
|
|
| T |
5505212 |
gaccattagattagagaggagtaccgatttcatcatgggttgtgcacactatattatttttc |
5505151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 2992846 - 2992788
Alignment:
| Q |
296 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
354 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
2992846 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
2992788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 39949549 - 39949607
Alignment:
| Q |
296 |
accattaaattggagaggagtatcgattttattatgggttgtgcacactatattatttt |
354 |
Q |
| |
|
||||||| ||| |||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
39949549 |
accattagattagagaggagtactgattttatcatgggttgtgcacactatatcatttt |
39949607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University