View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11756_low_1 (Length: 1120)
Name: NF11756_low_1
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 1009; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 1009; E-Value: 0
Query Start/End: Original strand, 18 - 1106
Target Start/End: Complemental strand, 31870723 - 31869639
Alignment:
| Q |
18 |
gaagctgctgtgaaggttgatgagtcgcattactttttctgctttcgtgtaccgaaggagaagaatgattccgattctgattcaagcgatgaggaaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870723 |
gaagctgctgtgaaggttgatgagtcgcattactttttctgctttcgtgtaccgaaggagaagaatgattccgattctgattcaagcgatgaggaaaaag |
31870624 |
T |
|
| Q |
118 |
aaaagagtaagttatctttccggcggaaagatcgtcggaaagaagaggataattcggatttgcttagctacggattaacgattgcgtcgaaaggacaaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870623 |
aaaagagtaagttatctttccggcggaaaggtcgtcggaaagaagaggataattcggatttgcttagctacggattaacgattgcgtcgaaaggacaaga |
31870524 |
T |
|
| Q |
218 |
ggatttggtgaaggagcttgatgaagttttgaaggaatgcagcaatttctctgttcaggaggtttcagagaaggccaagaagaaaggggaagctttagat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870523 |
ggatttggtgaaggagcttgatgaagttttgaaggaatgcagcaatttctctgttcaggaggtttcagagaaggccaagaagaaaggggaagctttagat |
31870424 |
T |
|
| Q |
318 |
ggttcattggcgatggagatatcgccggcggatttggataatgtgaaggagaagaaggaattgatggaggagagatgtgctgcttattggactacattgg |
417 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31870423 |
ggttcattggcgatggagatatcgcccgcggatttggataatgtgaaggagaagaaggaattgatggaggagagatgtgctgcctattggactacattgg |
31870324 |
T |
|
| Q |
418 |
ctcctaatgtggaggattatagtggaaccgcggcgaagctgatcgcggccggttctggtcaattggttaaagggattttgtggtgtggggatgttactgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870323 |
ctcctaatgtggaggattatagtggaaccgcggcgaagctgatcgcggccggttctggtcaattggttaaagggattttgtggtgtggggatgttactgt |
31870224 |
T |
|
| Q |
518 |
tgataggttgaaatggggtaatgagattatgaagaagaggatgggtcctcctacacaggctgagattaatccacaaaccttaaagaggattcaaaggtga |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870223 |
tgataggttgaaatggggtaatgagattatgaagaagaagatgggtcctcctacacaggctgagattaatccacaaaccttaaagaggattcaaaggtga |
31870124 |
T |
|
| Q |
618 |
ccctgcttaatcttggtttttgttttagttaattttgattttagttaaaaggagtttgaagtaaattgatttgtgctgaaaagtaacttaacaacaaaac |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31870123 |
ccctgcttaatcttggtttttgttttagttaattttgattttagttaaaaggagtttgaagtaaattgatttgtgttgaaaagtaacttaacaac----- |
31870029 |
T |
|
| Q |
718 |
aaaattgtgcacggtttagtttatattggctttgtatag-tttgcttgatgttgaaactttaaacatgcatcggggtaatgtagtgtaacgttttaaatt |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31870028 |
aaaattgtgcacggtttagtttatattggctttgtatagttttgcttgatgttgaaactttaaacatgcatcggggtaatgtagtgtaacgttttaaatt |
31869929 |
T |
|
| Q |
817 |
gtggtcgcgccatggtccttgatataacagagaattgcactcaaatgtgaccgatgctatctcaattatagtcacagtaacaacaaaaaccctgatgttg |
916 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869928 |
gtggtcgcgccatggtccttgatataacagagaattgcactcaaatgcgaccgatgctatctcaattatagtcacagtaacaacaaaaaccctgatgttg |
31869829 |
T |
|
| Q |
917 |
ctgcccagatctcagtcacagacttctgtttaaaacctttgcagctgcattacatgatgcaatctaaaggtctgctggcaaatgtagtgtaacctttaca |
1016 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31869828 |
ctgcccagatctcagtcacaaacttctgtttaaaacctttgcagctgcattacatgatgcaatctaaaagtctgctggcaaatgtagtgtaacctttaca |
31869729 |
T |
|
| Q |
1017 |
ctgccatttaaaacatcgnnnnnnnttattttttgaagtcgatgtttgtggttgagaattattaacactcaaatatcttgctggtctgtg |
1106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869728 |
ctgccatttaaaacatcgaaaaaaattattttttgaagtcgatgtttgtggttgagaattattaacactcaaatatcttgctggtctgtg |
31869639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 189 - 561
Target Start/End: Original strand, 8851324 - 8851693
Alignment:
| Q |
189 |
ggattaacgattgcgtcgaaaggacaagaggatttggtgaaggagcttgatgaagttttgaaggaatgcagcaatttctctgttcaggaggtttcagaga |
288 |
Q |
| |
|
||||| || |||||||||||||||||||| |||| |||||||| | |||| ||||| || | || || ||||| ||||| ||| ||||||| |||| |
|
|
| T |
8851324 |
ggattgactattgcgtcgaaaggacaagaacatttattgaaggagttggatgtgattttggagaactgtagtaatttttctgtgcagaaggtttcggaga |
8851423 |
T |
|
| Q |
289 |
aggccaagaagaaaggggaagctttagatggttcattggcgatggagatatcgccggcggatttgga-taatgtgaaggagaagaaggaattgatggagg |
387 |
Q |
| |
|
|||| |||||| || || | ||| ||||| ||||||| |||| |||||||| ||||||||| | || |||| |||||||||| ||||||||| |
|
|
| T |
8851424 |
aggcgaagaag---ggagaggttttggatggaaatttggcgaaggaggtatcgccgaaggatttggagtcatc-gaagaagaagaaggagatgatggagg |
8851519 |
T |
|
| Q |
388 |
agagatgtgctgcttattggactacattggctcctaatgtggaggattatagtggaaccgcggcgaagctgatcgcggccggttctggtcaattggttaa |
487 |
Q |
| |
|
| |||||| || ||||||||||||||||| || ||||||||||| |||||||| || || |||| | |||| || | || ||||| || || | || |
|
|
| T |
8851520 |
ggcaatgtgcggcgtattggactacattggcaccgaatgtggaggagtatagtgggactgctgcgaggatgatagcttcggggtctggacatgtgatcaa |
8851619 |
T |
|
| Q |
488 |
agggattttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaagaggatgg |
561 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||| ||||||| ||| || |||||||||| ||||||| |
|
|
| T |
8851620 |
ggggattttgtggtgtggtgatgttactatggataggttgcaatgggggaatcaggttatgaagaaaaggatgg |
8851693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 492 - 557
Target Start/End: Complemental strand, 27878369 - 27878304
Alignment:
| Q |
492 |
attttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaagagg |
557 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||||| |||| | |||||||||||| |
|
|
| T |
27878369 |
attttgtggtgcggtgatgttactgttgatagattgaaatggggtgatgatttcatgaagaagagg |
27878304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 27878466 - 27878417
Alignment:
| Q |
395 |
tgctgcttattggactacattggctcctaatgtggaggattatagtggaa |
444 |
Q |
| |
|
||||||||||||||| || ||||| || || ||||||||||||||||||| |
|
|
| T |
27878466 |
tgctgcttattggacaacgttggcaccaaacgtggaggattatagtggaa |
27878417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University