View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11756_low_11 (Length: 388)

Name: NF11756_low_11
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11756_low_11
NF11756_low_11
[»] chr1 (15 HSPs)
chr1 (28-378)||(27215357-27215707)
chr1 (28-304)||(27221319-27221595)
chr1 (106-304)||(27443248-27443443)
chr1 (28-95)||(27207986-27208053)
chr1 (28-104)||(27443468-27443544)
chr1 (28-95)||(27433066-27433133)
chr1 (106-266)||(27208086-27208246)
chr1 (106-304)||(27433166-27433367)
chr1 (28-95)||(27410236-27410303)
chr1 (28-93)||(27415756-27415821)
chr1 (106-197)||(27455314-27455409)
chr1 (37-91)||(27455223-27455277)
chr1 (324-377)||(27443189-27443241)
chr1 (203-245)||(27390262-27390304)
chr1 (203-245)||(27410497-27410539)


Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 28 - 378
Target Start/End: Original strand, 27215357 - 27215707
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatga 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  27215357 gttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttagtaagcgcatga 27215456  T
Q  128 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaact 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215457 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaact 27215556  T
Q  228 aaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaattagtgagagtttttc 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215557 aaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatatatattaattagtgagagtttttc 27215656  T
Q  328 gattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttct 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27215657 gattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttct 27215707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 28 - 304
Target Start/End: Original strand, 27221319 - 27221595
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatacgaatgaatttattaagcgcatga 127  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  27221319 gttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctcctccaaccactgcatatacaaatacaaatgaatttaataagcgcatga 27221418  T
Q  128 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccgtagaagaggaatgcaaaact 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27221419 agagaaattaacttagctaagtgaattgattaattatatggaaaattaatgtagttatgtattgatatatgtacgtaccatagaagaggaatgcaaaact 27221518  T
Q  228 aaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaatat 304  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27221519 aaggcatagagcaacgcgggtgcttgtcattttggatatggcttttgatgaatcttgttttgcaggcttgtgaatat 27221595  T

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Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 106 - 304
Target Start/End: Complemental strand, 27443443 - 27443248
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaattatatggaa---aattaatgtagttatgtattgatatatgtacg 202  Q
    ||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| ||||||||   |||||||||||||  ||| ||||||||         
T  27443443 aatgaatttattaagcgcaagaagaaaaatttacttagctaaatgaattgattaatcatatggaaattaattaatgtagttgagtagtgatatat----a 27443348  T
Q  203 taccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttgtgaat 302  Q
    |||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  27443347 taccatagaagaggaatgcaaaactaaggcatagagcaacacgagtgcttgtcattttggatatggc--ttgatgaatcttgttttgcaggcttgtgaat 27443250  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27207986 - 27208053
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 95  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27207986 gttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 27208053  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 27443544 - 27443468
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatatacaaatac 104  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||    
T  27443544 gttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctcctccaacaactgcataaagaaatac 27443468  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27433066 - 27433133
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27433066 gttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccgctgcata 27433133  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 266
Target Start/End: Original strand, 27208086 - 27208246
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaatt----gattaattatatggaaaattaatgtagttatgtattgatatatgtac 201  Q
    |||||||||||||| | ||||||||||||| |||| |||||| ||||||    |||||| ||||||||||||||||||||||  ||| ||||||||        
T  27208086 aatgaatttattaaccacatgaagagaaataaactaagctaaatgaattaatggattaactatatggaaaattaatgtagttgagtactgatatat---- 27208181  T
Q  202 gtaccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatat 266  Q
     |||| ||||||||||||||||| |||| ||| | |||||||||| |||   |||||||||||||    
T  27208182 ataccatagaagaggaatgcaaagctaaagcataaagcaacacggttgcacttcattttggatat 27208246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 106 - 304
Target Start/End: Original strand, 27433166 - 27433367
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatta----tatggaaaattaatgtagtt--atg--tattgatatat 197  Q
    |||||||||||||| | ||||||||| ||| || | |||||| |||||| ||| ||||    ||||||||||||||||||||  |||  || ||||||||    
T  27433166 aatgaatttattaaccacatgaagaggaataaaataagctaaatgaattaatttattaactatatggaaaattaatgtagttgaatgagtactgatatat 27433265  T
Q  198 gtacgtaccgtagaagaggaatgcaaaactaaggcacagagcaacacgggtgcttgtcattttggatatggcttttgattaatcttgttttgcaggcttg 297  Q
     |   |||| |||||||||||||| || |||| ||| | ||||||| ||||| |  |||||||||||||| |||  ||||||||||||||||||||||||    
T  27433266 at---taccatagaagaggaatgccaagctaaagcataaagcaacatgggtgttcttcattttggatatgactt--gattaatcttgttttgcaggcttg 27433360  T
Q  298 tgaatat 304  Q
    |||||||    
T  27433361 tgaatat 27433367  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 27410236 - 27410303
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcata 95  Q
    ||||||||||||||||| ||| |||| ||||| |||||||||||||| ||||||||||||||||||||    
T  27410236 gttcctggccatacagtatatccacatctattcgtgaatgtcaccttggctcctccaaccactgcata 27410303  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 27415821 - 27415756
Alignment:
Q  28 gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgca 93  Q
    ||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| |||||    
T  27415821 gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgca 27415756  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 27455314 - 27455409
Alignment:
Q  106 aatgaatttattaagcgcatgaagagaaattaacttagctaagtgaattgattaatt----atatggaaaattaatgtagttatgtattgatatat 197  Q
    |||||||||||||| | ||||||||| ||| |||| |||||| |||||| ||| |||    |||||||||||||||||||||  ||||||||||||    
T  27455314 aatgaatttattaaccacatgaagagcaataaactaagctaaatgaattaattgatttactatatggaaaattaatgtagttgggtattgatatat 27455409  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 27455223 - 27455277
Alignment:
Q  37 catacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactg 91  Q
    |||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||    
T  27455223 catacaatttattcacacttattggtgaatgtcaccttagctcctccaactactg 27455277  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 27443241 - 27443189
Alignment:
Q  324 tttcgattgtagtttgttgtgtgaaggtgatttgatgaagttgctctctgcttc 377  Q
    |||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||    
T  27443241 tttcgattgtagtttgctgtttgaaggtga-ttgatgaagttgttctctgcttc 27443189  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 27390262 - 27390304
Alignment:
Q  203 taccgtagaagaggaatgcaaaactaaggcacagagcaacacg 245  Q
    |||| ||||||||||||||||| |||||||| |||||||||||    
T  27390262 taccatagaagaggaatgcaaagctaaggcagagagcaacacg 27390304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 27410497 - 27410539
Alignment:
Q  203 taccgtagaagaggaatgcaaaactaaggcacagagcaacacg 245  Q
    |||| ||||||||||||||||| |||||||| |||||||||||    
T  27410497 taccatagaagaggaatgcaaagctaaggcagagagcaacacg 27410539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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