View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_low_13 (Length: 263)
Name: NF11756_low_13
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 52583930 - 52583674
Alignment:
| Q |
10 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttc-----ctgattttatgttcactagtactaataaagaaa |
104 |
Q |
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| T |
52583930 |
acatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttctcttctcttcctgattttatgttcactagtactaataaagaaa |
52583831 |
T |
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| Q |
105 |
attgcatcatacttgagtagtattcgaat------------taagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
192 |
Q |
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| T |
52583830 |
attgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagtttatcaaataagtgtttatgtataaattatttttaaaacaaaaatc |
52583731 |
T |
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| Q |
193 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttat |
249 |
Q |
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| T |
52583730 |
aaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttat |
52583674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 19395216 - 19395147
Alignment:
| Q |
182 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttattga |
252 |
Q |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaattgattga |
19395147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
147 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
189 |
Q |
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| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
147 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
189 |
Q |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 5939015 - 5939051
Alignment:
| Q |
154 |
ataagtgtttatgtataaattatttttaaaacaaaaa |
190 |
Q |
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| T |
5939015 |
ataagtgtttatgtataagttatttttataacaaaaa |
5939051 |
T |
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