View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11756_low_14 (Length: 261)

Name: NF11756_low_14
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11756_low_14
NF11756_low_14
[»] chr1 (10 HSPs)
chr1 (20-243)||(2288966-2289189)
chr1 (102-224)||(670986-671108)
chr1 (118-207)||(28239054-28239146)
chr1 (120-185)||(6326786-6326851)
chr1 (122-197)||(47569148-47569226)
chr1 (111-190)||(14508839-14508918)
chr1 (127-204)||(28231490-28231570)
chr1 (136-185)||(677216-677265)
chr1 (136-181)||(21159183-21159228)
chr1 (21-53)||(677095-677127)
[»] chr5 (1 HSPs)
chr5 (136-198)||(1717892-1717954)
[»] chr3 (1 HSPs)
chr3 (119-196)||(47924934-47925011)
[»] chr6 (2 HSPs)
chr6 (136-190)||(24934101-24934155)
chr6 (136-190)||(24941634-24941688)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 2289189 - 2288966
Alignment:
Q  20 tggagaaactcaaagagccatacaattgctgagacaggtactattactaaagattgacaccagacaagaaatgtatgacatagttttgttgtataacgaa 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2289189 tggagaaactcaaagagccatacaattgctgggacaggtactattactaaagattcacaccagacaagaaatgtatgacatagttttgttgtataacgaa 2289090  T
Q  120 atcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgcctgattatgacacacatc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289089 atcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgcctgattatgacacacatc 2288990  T
Q  220 atcatataacttaaggcttctgtg 243  Q
    ||||||||||||||||||| ||||    
T  2288989 atcatataacttaaggcttgtgtg 2288966  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 224
Target Start/End: Complemental strand, 671108 - 670986
Alignment:
Q  102 gttttgttgtataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatcatgc 201  Q
    ||||||||| ||||  |||||||| |||||||  |||| ||||||||||||| ||||| ||||| |||||||| | |||||||||||||||| |||  |     
T  671108 gttttgttggataagaaaatcatattcaggctgtgcaaagatagacttgtaaaccaaggctatggtttatattttgaaatgattgttaacaagatcgagt 671009  T
Q  202 ctgattatgacacacatcatcat 224  Q
    |||||| || |||||||||||||    
T  671008 ctgattgtgtcacacatcatcat 670986  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 28239054 - 28239146
Alignment:
Q  118 aaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctgatt 207  Q
    ||||||||  ||||||| |||| ||||||||||||| ||||||||||||||| |||||| |||||||   ||||||||||||||  |||||||    
T  28239054 aaatcatatacaggctctgcaaagatagacttgtaaaccaagcctatgatttgtattctgaaatgattcatgttaacaacatcagccctgatt 28239146  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 6326851 - 6326786
Alignment:
Q  120 atcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 185  Q
    ||||||||||| ||| |||| |||||||||| || |||||||||||||||||||||| ||||||||    
T  6326851 atcatactcagactctgcaaagatagacttgcaaaccaagcctatgatttatattctgaaatgatt 6326786  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 47569148 - 47569226
Alignment:
Q  122 catactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt---gttaacaacatc 197  Q
    |||| |||| ||| |||| ||||||||||||| |||||||||||||||||||||| ||||||||   ||||||||||||    
T  47569148 catattcagactctgcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattcacgttaacaacatc 47569226  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 14508918 - 14508839
Alignment:
Q  111 tataacgaaatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 190  Q
    |||||| | |||||| |||| ||  |||| ||||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  14508918 tataacaatatcatattcagactatgcaaagatagacgtgtaaaccaagcctatgatttatattctgaaatgattgttaa 14508839  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 204
Target Start/End: Original strand, 28231490 - 28231570
Alignment:
Q  127 tcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgat---tgttaacaacatcatgcctg 204  Q
    |||| ||| |||| ||||||||||| | |||||||||||| ||||||||| |||||||   |||||||||||||| |||||    
T  28231490 tcagactctgcaaagatagacttgttaaccaagcctatgaattatattctgaaatgatttatgttaacaacatcaagcctg 28231570  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 677216 - 677265
Alignment:
Q  136 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgatt 185  Q
    |||| ||||||||||||   ||||||||||||||||||||| ||||||||    
T  677216 gcaaagatagacttgtacatcaagcctatgatttatattctgaaatgatt 677265  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 21159228 - 21159183
Alignment:
Q  136 gcaaggatagacttgtaatccaagcctatgatttatattctaaaat 181  Q
    |||| ||||||||| ||| |||||||||||||||||||||| ||||    
T  21159228 gcaaagatagacttataaaccaagcctatgatttatattctgaaat 21159183  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 677095 - 677127
Alignment:
Q  21 ggagaaactcaaagagccatacaattgctgaga 53  Q
    ||||||||||||||||||||||||||| |||||    
T  677095 ggagaaactcaaagagccatacaattgttgaga 677127  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 1717892 - 1717954
Alignment:
Q  136 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacatca 198  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||    
T  1717892 gcaaagatagacttgtaaaccaagcctatgatttatattctgaaatgattgtaaagaacatca 1717954  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 47925011 - 47924934
Alignment:
Q  119 aatcatactcaggctcggcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaacaacat 196  Q
    |||||||||||  ||| |||| |||||||| ||||  ||||||||||| || |||||| ||||||||||||| |||||    
T  47925011 aatcatactcaccctctgcaaagatagactagtaaatcaagcctatgacttctattctgaaatgattgttaagaacat 47924934  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 24934101 - 24934155
Alignment:
Q  136 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 190  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24934101 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24934155  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 24941634 - 24941688
Alignment:
Q  136 gcaaggatagacttgtaatccaagcctatgatttatattctaaaatgattgttaa 190  Q
    ||||||||| ||||||||| || |||| |||||||| |||| |||||||||||||    
T  24941634 gcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaa 24941688  T

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