View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_low_2 (Length: 751)
Name: NF11756_low_2
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 713; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 15 - 735
Target Start/End: Complemental strand, 40659538 - 40658818
Alignment:
| Q |
15 |
caaaggaaagaaaggagagaacgtccttgtagtaggttttaagggaagttgaatcagtaatgtcgccatgaatatgatcattccagatatcatctttatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659538 |
caaaggaaagaaaggagagaacgtccttgtagtaggttttaagggaagttgaatcagtaatgtcgccatgaatatgatcattccagatatcatctttatc |
40659439 |
T |
|
| Q |
115 |
aagatgatctgcaacccggcgaataatggacttctttggatcttcattcgaatccgtggaagattgacggccatgtagaaatctagactcattagccttt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659438 |
aagatgatctgcaacccggcgaataatggacttctttggatcttcattcgaatccgtggaagattgacggccatgtagaaatctagactcattagccttt |
40659339 |
T |
|
| Q |
215 |
gtcaaccagagttgtcgcaaagcactagggagacgacatgttttcacctttccattgcgctttctcttggaaacttggaccatgttccgatctatcaact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659338 |
gtcaaccagagttgtcgcaaagcactagggagacgacatgttttcacctttccattgcgctttctcttggaaacttggaccatgttccgatctatcaact |
40659239 |
T |
|
| Q |
315 |
ctgtcaagtacctttctgcaactagctctggcggcatttcgtcatcttctgtctgatgaaccagactctcggcaacccacaaaacaaccaaccttctgac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659238 |
ctgtcaagtacctttctgcaactagctctggcggcatttcgtcatcttctgtctgatgaaccagactctcggcaacccacaaaacaaccaaccttctgac |
40659139 |
T |
|
| Q |
415 |
agggatcccaaattcagcagggaatatcacaaagtaaaatagacatcttctcagataagaaggtaagttattattaattgtgtcgagcattccagaccaa |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659138 |
agggatcccaaattcagcagggaatatcacaaagtaaaatagacatcttctcagataagaaggtaagttattattaattgtgtcgagcattccagaccaa |
40659039 |
T |
|
| Q |
515 |
ctttgtatttgatcttcattgagctgctcaccccgcaacactcttgaccactcctcatgtgtaacatctttatgcgaaagaaaatcactcattttcaata |
614 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40659038 |
ctttgtatttgatattcattgagctgctcaccccgcaatactcttgaccactcctcatgtgtaacatctttatgcgaaagaaaatcactcattttcaata |
40658939 |
T |
|
| Q |
615 |
tttgtgatggcagccccccacatttcattacaatttcttttccaaccttgataagttctgtttctgactcggggtgaatgtccaccttcaaatgtcttgt |
714 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40658938 |
tttgtgatggcagccccccacatttcattacaatttcttttccaaccttgataagttctgtttctgactcggggtgaatgtccaccttcaaatgtcttgt |
40658839 |
T |
|
| Q |
715 |
gaacaacagccaactagtttc |
735 |
Q |
| |
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||||||||||||||||||||| |
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| T |
40658838 |
gaacaacagccaactagtttc |
40658818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 203 - 461
Target Start/End: Complemental strand, 40638531 - 40638276
Alignment:
| Q |
203 |
tcattagcctttgtcaaccagagttgtcgcaaagcactagggagacgacatgttttcacctttccattgcgctttctcttggaaacttggaccatgttcc |
302 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||| || ||| || | |||| |
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| T |
40638531 |
tcattagcttttgtccaccagagttgtcgcaaagcatatgggagacggcatgttttgaccttgccattgcgctttctcttggcaatttgaacgaggttct |
40638432 |
T |
|
| Q |
303 |
gatctatcaactctgtcaagtacctttctgcaactagctctggcggcatttcgtcatcttctgtctgatgaaccagactctcggcaacccacaaaacaac |
402 |
Q |
| |
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|||||||||||| ||||||||||| |||||| ||| ||||||| ||| || | |||||| ||||| ||| | ||| |||||| ||||| | || |
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| T |
40638431 |
gatctatcaactttgtcaagtacccttctgctacttgctctgggggc---tcttggtcttctccatgatgcacccgctcctctgcaaccaacaaagctac |
40638335 |
T |
|
| Q |
403 |
caaccttctgacagggatcccaaattcagcagggaatatcacaaagtaaaatagacatc |
461 |
Q |
| |
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||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40638334 |
caatcttctaatagggatcccaaattcagcagggaataggccaaagtaaaatagacatc |
40638276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 206 - 326
Target Start/End: Original strand, 40626769 - 40626889
Alignment:
| Q |
206 |
ttagcctttgtcaaccagagttgtcgcaaagcactagggagacgacatgttttcacctttccattgcgctttctcttggaaacttggaccatgttccgat |
305 |
Q |
| |
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||||| |||||| |||||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||| | || ||| || | |||| ||| |
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| T |
40626769 |
ttagcttttgtccaccagagttgtcgcaaagcataggggaggcgacatgttttgacgttgccattgcgctttctctcagcaatttgaacgaggttctgat |
40626868 |
T |
|
| Q |
306 |
ctatcaactctgtcaagtacc |
326 |
Q |
| |
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||||||||||||||||||||| |
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| T |
40626869 |
ctatcaactctgtcaagtacc |
40626889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 538
Target Start/End: Original strand, 40626967 - 40627098
Alignment:
| Q |
407 |
cttctgacagggatcccaaattcagcagggaatatcacaaagtaaaatagacatcttctcagataagaaggtaagttattattaattgtgtcgagcattc |
506 |
Q |
| |
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||||| ||||| |||||||||||| ||||||||| | ||||||||||||| |||| || ||||| |||||||| ||| || |||| | ||| | |
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| T |
40626967 |
cttctaacaggaatcccaaattcaacagggaataacccaaagtaaaataggcatccccttagatacataggtaagtgattcttgattgctttaagcgtct |
40627066 |
T |
|
| Q |
507 |
cagaccaactttgtatttgatcttcattgagc |
538 |
Q |
| |
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||||||| |||||||||||||||| |||||| |
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| T |
40627067 |
cagaccagatttgtatttgatcttccttgagc |
40627098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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