View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_low_3 (Length: 630)
Name: NF11756_low_3
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 572
Target Start/End: Complemental strand, 31857912 - 31857343
Alignment:
| Q |
8 |
ggagcacagacactgaggagaagattggactacacttgaaagttgtgtgcaacatgaagttgatggatttgaagaactccccattatgtagtttagacaa |
107 |
Q |
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| T |
31857912 |
ggagcatagacactgaggagaagattggactacacttgaaagttgtgagcaacatgaagatgatggatttgaagaactccccattatgtagtttagacaa |
31857813 |
T |
|
| Q |
108 |
gggctcaagctagtgagtgttgatgtacaacctgattgagcttcattttgtgtacacatatttgccactaggaccataactagacacataatatactctt |
207 |
Q |
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| T |
31857812 |
gggctcaagctagtgatcgttgatgtacaacctgattgagcttcattttgagtacacatattggccactaggaccataactagaaataggatataccctt |
31857713 |
T |
|
| Q |
208 |
taaatgccattactccttttatcttagaactaatt----cttatat--atctgttattcttttaaacttatggatgtatgaagttttaatgaaaaggtaa |
301 |
Q |
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| T |
31857712 |
taaatgccattactccttttatcttgaaactgattaactctgatatgtatttgttatttgttgatatttattgatgtttga-gtgttaatgaaaagttaa |
31857614 |
T |
|
| Q |
302 |
tgaaggataggttatttatatatactataaaatactcttcaaattgtaagaaaatgacaagtaaa-tgcaggttacctactctttggaattatatgaccc |
400 |
Q |
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|||||| || ||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31857613 |
tgaaggctatgttatttatatataccatagaatactcttgaaattctaagaaaatgataagtaaaatgcaggttacctactctttggaattatatgaccc |
31857514 |
T |
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| Q |
401 |
tcttgttgtacatacatatataaataaaaac-tttttcgttaaaagaaagtgtttattgtcaacaatttaattaaattaaaatgtgataataaacggttg |
499 |
Q |
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| T |
31857513 |
tcttgttgtacata--tatataaataaaaacctttttccttgaaaggaagtgcttattgtcaacaatttaattaaattaaaatgtgataataaacggttg |
31857416 |
T |
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| Q |
500 |
cactttgaccccgcaacaataccgccacatcttgtatccttctctaacttcatgtcatcaatttctccttcat |
572 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
31857415 |
cactttgaccccacaacaataccgccacatcttgtatccttcactaacttcaattcatcaatttctccttcat |
31857343 |
T |
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