View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11756_low_4 (Length: 534)

Name: NF11756_low_4
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11756_low_4
NF11756_low_4
[»] chr3 (3 HSPs)
chr3 (1-525)||(1575669-1576221)
chr3 (93-172)||(27081386-27081465)
chr3 (235-281)||(32928566-32928612)
[»] chr5 (2 HSPs)
chr5 (386-508)||(2190679-2190793)
chr5 (198-280)||(13864347-13864426)
[»] chr8 (3 HSPs)
chr8 (91-143)||(3730376-3730428)
chr8 (91-144)||(18464659-18464712)
chr8 (239-280)||(42172222-42172263)
[»] chr4 (2 HSPs)
chr4 (198-234)||(44857208-44857244)
chr4 (239-280)||(24079819-24079860)
[»] chr7 (1 HSPs)
chr7 (91-144)||(21292220-21292273)
[»] chr6 (1 HSPs)
chr6 (93-145)||(24316542-24316594)
[»] chr2 (1 HSPs)
chr2 (198-234)||(18678140-18678176)
[»] chr1 (1 HSPs)
chr1 (198-234)||(24978247-24978283)


Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Complemental strand, 1576221 - 1575669
Alignment:
Q  1 ccactgaaagatgttagaaagtgtagtggactcaaccgccaacacggtaatttgcaaacccactcacaccaaccgtttattgcgatcaatttaatcaacc 100  Q
    ||||||||||||| | ||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  1576221 ccactgaaagatgcttgaaagtgtagtggactcaaccgccaacatagtaatttgcaaatccactcacaccaaccgtttgctgcgatcaatttaatcaacc 1576122  T
Q  101 atttctggctcacaacaagtgatcatacaagcacaacctaggcaagcacgaacaagcaccaacatgaaccagcaactccctgtagcaact---------- 190  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |              
T  1576121 atttctggcccacaacaagtgatcatacaagcacaaccttggcaagcacgaagaagcaccaacatgaaccagcaactccctgtagcaaatagtgaatgga 1576022  T
Q  191 -----ccttgtaagcttaactcaatttgtatagataatacataatatattatacaagatccggagttcaatccccgaccaccacaaaaacaaaaataag- 284  Q
         ||| ||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||||| ||||||||||||| ||||| ||      
T  1576021 caagacctcgtaagcttaactcaatttgtatagataatgcataatatattatacaaagttcggagttcaatccccaaccaccacaaaaaaaaaaaaaaaa 1575922  T
Q  285 ------ctacaacactaaattattttttacggaagtttataaa------gataaagaagcattttggtagtttcaaaataaccaacacttctttcttcat 372  Q
          |||||| ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575921 aaaaaactacaaaactaaattattttttacggaagtttataaaaataaagataaagaagcattttggtagtttcaaaataaccaacacttctttcttcat 1575822  T
Q  373 atttcttttatggaaaatgctctttggaacaacaatatacacacacgagaagcgacgaaccaatctccacccttgaatttttatttatgccttccttcct 472  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1575821 atttcttttatggaaaatgctctttggaacaacaatacacacacacgagaagcgacgaaccattctccacccttgaatttttatttatgccttccttcct 1575722  T
Q  473 gtaaccaattgaattccctctcccatgtttaactctccatcacatgatgtcca 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1575721 gtaaccaattgaattccctctcccatgtttaactctccatcacatgatttcca 1575669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 27081386 - 27081465
Alignment:
Q  93 aatcaaccatttctggctcacaacaagtgatcatacaagcacaacctaggcaagcacgaacaagcaccaacatgaaccag 172  Q
    ||||||||||||||||| |  | |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  27081386 aatcaaccatttctggcccttagcaagcgatcatacaagcacaaccgaggcaaacacgaacaagcaccaacatgaaccag 27081465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 32928612 - 32928566
Alignment:
Q  235 tatacaagatccggagttcaatccccgaccaccacaaaaacaaaaat 281  Q
    |||| |||||| ||||||||| |||||||||||||||||| ||||||    
T  32928612 tatataagatctggagttcaaaccccgaccaccacaaaaaaaaaaat 32928566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 508
Target Start/End: Original strand, 2190679 - 2190793
Alignment:
Q  386 aaaatgctctttggaacaacaatatacacacacgagaagcgacgaaccaatctccacccttgaatttttatttatgccttccttcctgtaaccaattgaa 485  Q
    |||||||||||| | || ||||||||||| ||||||||||||||||||| || | ||||||| |||||||        ||||||||||||||||||||||    
T  2190679 aaaatgctctttagtacgacaatatacacgcacgagaagcgacgaaccattcacaacccttggattttta--------ttccttcctgtaaccaattgaa 2190770  T
Q  486 ttccctctcccatgtttaactct 508  Q
    ||| ||||||||||||| |||||    
T  2190771 ttctctctcccatgttttactct 2190793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 13864347 - 13864426
Alignment:
Q  198 agcttaactcaatttgtatagataatacataatatattatacaagatccggagttcaatccccgaccaccacaaaaacaaaaa 280  Q
    ||||||||||| || ||||  | ||||||||||||||    |||| ||||| |||||| |||||||||||||||||| |||||    
T  13864347 agcttaactcagttggtatgaacaatacataatatatg---caaggtccggggttcaaaccccgaccaccacaaaaaaaaaaa 13864426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 3730428 - 3730376
Alignment:
Q  91 ttaatcaaccatttctggctcacaacaagtgatcatacaagcacaacctaggc 143  Q
    ||||||| |||||||||||  |||||||| |||||||||||||| ||||||||    
T  3730428 ttaatcagccatttctggccaacaacaagcgatcatacaagcactacctaggc 3730376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 18464712 - 18464659
Alignment:
Q  91 ttaatcaaccatttctggctcacaacaagtgatcatacaagcacaacctaggca 144  Q
    ||||||| ||||||||||| |||| |||| || |||||| ||||||||||||||    
T  18464712 ttaatcagccatttctggcccacatcaagcgaacatacaggcacaacctaggca 18464659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 42172263 - 42172222
Alignment:
Q  239 caagatccggagttcaatccccgaccaccacaaaaacaaaaa 280  Q
    ||||||||||||||||| |||| ||||||||||||| |||||    
T  42172263 caagatccggagttcaaaccccaaccaccacaaaaaaaaaaa 42172222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 44857244 - 44857208
Alignment:
Q  198 agcttaactcaatttgtatagataatacataatatat 234  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44857244 agcttaactcaattggtatagataatacataatatat 44857208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 24079860 - 24079819
Alignment:
Q  239 caagatccggagttcaatccccgaccaccacaaaaacaaaaa 280  Q
    |||| |||||||||||| |||||||||||||||||| |||||    
T  24079860 caaggtccggagttcaaaccccgaccaccacaaaaaaaaaaa 24079819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 21292273 - 21292220
Alignment:
Q  91 ttaatcaaccatttctggctcacaacaagtgatcatacaagcacaacctaggca 144  Q
    ||||||| |||||||| || |||| |||| |||||||||||||||| |||||||    
T  21292273 ttaatcagccatttctagcccacatcaagcgatcatacaagcacaaactaggca 21292220  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 24316594 - 24316542
Alignment:
Q  93 aatcaaccatttctggctcacaacaagtgatcatacaagcacaacctaggcaa 145  Q
    ||||| |||||||| ||  |||||||| |||||||||||||||||| ||||||    
T  24316594 aatcagccatttctagcctacaacaagagatcatacaagcacaaccgaggcaa 24316542  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 18678140 - 18678176
Alignment:
Q  198 agcttaactcaatttgtatagataatacataatatat 234  Q
    |||||||||||||| |||| |||||||||||||||||    
T  18678140 agcttaactcaattagtattgataatacataatatat 18678176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 24978247 - 24978283
Alignment:
Q  198 agcttaactcaatttgtatagataatacataatatat 234  Q
    ||||||||||| || ||||||||||||||||||||||    
T  24978247 agcttaactcagttggtatagataatacataatatat 24978283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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