View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_low_5 (Length: 485)
Name: NF11756_low_5
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 48171792 - 48171308
Alignment:
| Q |
1 |
gagagaaatcaccaatcacaacttcatcttctggattcccacccaccaactcttggttcagtaaatcctcccacacagcatcgcccaaattactctcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48171792 |
gagagaaatcaccaatcacaacttcatcttctggattcccacccaccaactcttggttcagtaaatcctcccacacagcatcacccaaattactctcatt |
48171693 |
T |
|
| Q |
101 |
accagttggaactgaactcaatgcagtgtagtccttaacttcactgcttgattcattatcataagcacttaacagtgtctccatctcagactcaatagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171692 |
accagttggaactgaactcaatgcagtgtagtccttaacttcactgcttgattcattatcataagcacttaacagtgtctccatctcagactcaatagta |
48171593 |
T |
|
| Q |
201 |
gtcaaaccctcttgctgttcttgacaagagtaatcgaccacagattcaattggcacagcccttatagctccagaatcaatttgcaaattctccaaactcg |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48171592 |
gtcaaaccctcttgctgttcttgacaagagtaatcaaccacagattcaattggcacagcccttatagctccagaatcattttgcaaattctccaaactca |
48171493 |
T |
|
| Q |
301 |
aattagctgtgagcctccgttttcgcttcatttcaacgcatttcaactctctattccgtgccaattgttgtataaaagattgattgctaagtgcttttgc |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48171492 |
aactagctgtgagcctccgttttcgcttcatttcaacgcctttcaactctctattctgtgccaattgttgtataaaagattgattgctgagtgcttttgc |
48171393 |
T |
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| Q |
401 |
aaggaaattcatcatctgttgatgtttcttctcagtaaccaacaacctagcttccatagcagataattgctcccttgaattatgc |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171392 |
aaggaaattcatcatctgttgatgtttcttctcagtaaccaacaacctagcttccatagcagataattgctcccttgaattatgc |
48171308 |
T |
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