View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11756_low_8 (Length: 435)
Name: NF11756_low_8
Description: NF11756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11756_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 42206913 - 42206763
Alignment:
| Q |
19 |
catccatccctaatcccttacaaa-tatttatcaaacgatgtatatatgtgcatcaattcctaccctcaaaattgaacgagggacccaacattcagatga |
117 |
Q |
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| T |
42206913 |
catccatccctaatcccttacaaaatatttatgaaacgatgtat----gtgcatcaattcctaccctcaaaattgaacgagggacccaacattcagatga |
42206818 |
T |
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| Q |
118 |
atgtcactgcaagattttttgatgttacaaaattgaaggttctcttttaattgaa |
172 |
Q |
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| T |
42206817 |
atgtcactgcaagattttttgatgttacaaaattgaaggttctcttttaattgaa |
42206763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 42206768 - 42206632
Alignment:
| Q |
274 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtaaataaatacgttggaatgaaaattccaaaattaccgtagca |
373 |
Q |
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| T |
42206768 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgt-----------ttcgaaa--------caaaattaccgtagca |
42206688 |
T |
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| Q |
374 |
aacaaaaacatttatgtttcgaaacatcagcgtcaactgagcacggttcttctctc |
429 |
Q |
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| T |
42206687 |
aacaaaaacatttatgtttcgaaacattagcgtcaactgagcacggttcttttctc |
42206632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 42208015 - 42207908
Alignment:
| Q |
142 |
ttacaaaattgaaggttctcttttaattgaagcagaagattgaatgttcctgaataattaagaactagaaaacaggtaacccagcaccgttcccaatagg |
241 |
Q |
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| T |
42208015 |
ttacaaaattgaaggttcacttttatttgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaacccaacatcattcccaatagg |
42207916 |
T |
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| Q |
242 |
catcaatt |
249 |
Q |
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| T |
42207915 |
catcaatt |
42207908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 42207787 - 42207742
Alignment:
| Q |
253 |
tttctttctttcaagcagaagattgaatgttgttgaataatcaaga |
298 |
Q |
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| T |
42207787 |
tttctttctttcaagcagaagattgaatgttcttgaataatcaaga |
42207742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 42207702 - 42207646
Alignment:
| Q |
344 |
tggaatgaaaattccaaaattaccgtagcaaacaaaaacatttatgtttcgaaacat |
400 |
Q |
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| T |
42207702 |
tggaatcaaaattccaaaattaccgtagcgaacaaaaaagtttatatttcaaaacat |
42207646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Complemental strand, 42207531 - 42207486
Alignment:
| Q |
336 |
aaatacgttggaatgaaaattccaaaattaccgtagcaaacaaaaa |
381 |
Q |
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| T |
42207531 |
aaatatgttggaattaaaattcaaaaattaccgtagcaaacgaaaa |
42207486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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