View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11757_high_11 (Length: 307)

Name: NF11757_high_11
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11757_high_11
NF11757_high_11
[»] chr8 (3 HSPs)
chr8 (47-273)||(28975208-28975434)
chr8 (1-41)||(28975455-28975495)
chr8 (165-226)||(40264080-40264141)
[»] chr1 (3 HSPs)
chr1 (73-256)||(33065229-33065412)
chr1 (153-226)||(8983389-8983462)
chr1 (156-239)||(21492127-21492210)
[»] chr6 (1 HSPs)
chr6 (78-239)||(13580630-13580790)
[»] scaffold0032 (1 HSPs)
scaffold0032 (156-239)||(115152-115235)
[»] scaffold0024 (1 HSPs)
scaffold0024 (153-239)||(160057-160143)
[»] chr4 (1 HSPs)
chr4 (71-226)||(9284749-9284905)
[»] scaffold0111 (1 HSPs)
scaffold0111 (152-239)||(45556-45643)
[»] scaffold0041 (1 HSPs)
scaffold0041 (153-226)||(3803-3876)
[»] chr7 (3 HSPs)
chr7 (153-226)||(20381927-20382000)
chr7 (157-226)||(11292941-11293010)
chr7 (159-222)||(38993526-38993589)
[»] chr3 (3 HSPs)
chr3 (153-222)||(20951968-20952037)
chr3 (206-245)||(10288024-10288063)
chr3 (207-249)||(10303737-10303779)
[»] chr2 (1 HSPs)
chr2 (153-226)||(27206783-27206856)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 28975434 - 28975208
Alignment:
Q  47 ccacatagcaatccgaatgtgcagcatgaacatgacaaagttaatgcggatagacctttcacttcggtcttatctcggaaacagaaacaacatgttagnn 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  28975434 ccacatagcaatccgaatgtgcagcatgaacatgacaaagttaatgcggatagacctttcacttcggtcttatctcggaaacagaaacaacatgttagaa 28975335  T
Q  147 nnnnntcttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttattggaatgactcgac 246  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975334 aaaaatcttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttattggaatgactcgac 28975235  T
Q  247 gagtgctttgatcgttggcacaacttg 273  Q
    |||||||||||||||||||||||||||    
T  28975234 gagtgctttgatcgttggcacaacttg 28975208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28975455 - 28975495
Alignment:
Q  1 tgtcaccattcggatgcatacttgcgcattgtatttctctg 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28975455 tgtcaccattcggatgcatacttgcgcattgtatttctctg 28975495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 40264141 - 40264080
Alignment:
Q  165 aagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaatttt 226  Q
    ||||||||||| |||||||||| |||||||| |||||| | ||||| |||| ||||||||||    
T  40264141 aagccaccgccatataaaacccgctctcaggcaggatcaaattcaggtgataaatgaatttt 40264080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 33065412 - 33065229
Alignment:
Q  73 tgaacatgacaaagttaatgcggatagacctttcacttcggtcttatctcggaaacagaaacaacatgttagnnnnnnntcttcagattggtaagccacc 172  Q
    |||| ||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||       |||||| |||||||||| |||    
T  33065412 tgaatatgacaaagctaatgcagatagacctttcactccggtcttatctcggaaacaaaaacaacaggttaggaaaaa-tcttcaaattggtaagcaacc 33065314  T
Q  173 gccttataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttatt-ggaatgactcgacgagtgctttg 256  Q
    |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| || |||||||||||||||||||||||    
T  33065313 gccttataaaacccgctctcagggaggatccacttcaggtggtcaatgaattttctttgttgggaatgactcgacgagtgctttg 33065229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 8983389 - 8983462
Alignment:
Q  153 cttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaatttt 226  Q
    ||||||||||| ||||||||||| |||||||||| |||||| | |||||| | ||||| |||| ||||||||||    
T  8983389 cttcagattggcaagccaccgccatataaaacccgctctcatgcaggatcaaattcaggtgataaatgaatttt 8983462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 21492210 - 21492127
Alignment:
Q  156 cagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttattggaatg 239  Q
    ||||| || ||||| ||||| || ||||||| |||||||||||||||||  |||| |||| |||||||||  ||||||||||||    
T  21492210 cagataggcaagccgccgccatacaaaacccgctctcagggaggatccaactcaggtgataaatgaatttattttattggaatg 21492127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 78 - 239
Target Start/End: Complemental strand, 13580790 - 13580630
Alignment:
Q  78 atgacaaagttaatgcggatagacctttcacttcggtcttatctcggaaacagaaacaacatgttagnnnnnnntcttcagattggtaagccaccgcctt 177  Q
    ||||||||| |||||| || |  ||||||||| |||||||||||| ||||||||||||||| || |         || ||||||||||||||||| || |    
T  13580790 atgacaaagctaatgcagaaaagcctttcactccggtcttatctcagaaacagaaacaacaggtgaagaagaac-ctccagattggtaagccaccaccgt 13580692  T
Q  178 ataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttattggaatg 239  Q
    ||| || || ||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  13580691 atagaatccgctctcagggaggatccactacaggtgatcaatgaattttctctattggaatg 13580630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 115152 - 115235
Alignment:
Q  156 cagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttattggaatg 239  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | ||  |||| |||||||||||| || ||||||| ||||    
T  115152 cagattggtaagccaccgccttataaaacccgctctcagggaggtttcaactcaggtgatcaatgaatattttttattgcaatg 115235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 160057 - 160143
Alignment:
Q  153 cttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttattggaatg 239  Q
    ||||||||||||||||| ||||| ||||| |||| || |||||||||||||| ||||| ||| ||||||||| ||| ||||||||||    
T  160057 cttcagattggtaagccgccgccatataatacccgctttcagggaggatccaattcaggtgaccaatgaattctctatattggaatg 160143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 226
Target Start/End: Original strand, 9284749 - 9284905
Alignment:
Q  71 catgaacatgacaaagttaatgcggatagacctttcacttcggtcttatctcggaaacagaaacaacatgttagnnnnnnntcttcagattggtaagcca 170  Q
    |||||| |||||||||  ||||| || | ||| ||||||   |||||||||||||||||||||||||| ||||         |||| |||||||||||||    
T  9284749 catgaatatgacaaagccaatgcagaaaaaccattcactctagtcttatctcggaaacagaaacaacaggttaagaaataa-cttctgattggtaagcca 9284847  T
Q  171 ccgccttataaa--acccactctcagggaggatccacttcagatgatcaatgaatttt 226  Q
    ||||||||||||  | ||  ||||||||||||||||||| || |||||||||||||||    
T  9284848 ccgccttataaataatccgttctcagggaggatccactttagttgatcaatgaatttt 9284905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 45643 - 45556
Alignment:
Q  152 tcttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaattttctttattggaatg 239  Q
    |||||||||||||||||||||||  || ||||||| |||||| |||||||||| | ||| |||| |||||||||  ||||||||||||    
T  45643 tcttcagattggtaagccaccgcaatacaaaacccgctctcaaggaggatccaatccaggtgataaatgaatttattttattggaatg 45556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 3876 - 3803
Alignment:
Q  153 cttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaatttt 226  Q
    ||||||||||| |||||||| || |||||||||| ||||||||||||||| | ||||| |||| ||||||||||    
T  3876 cttcagattggcaagccaccaccatataaaacccgctctcagggaggatcaaattcaggtgataaatgaatttt 3803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 20381927 - 20382000
Alignment:
Q  153 cttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaatttt 226  Q
    ||||||||||| |||||||| || |||||||||| ||||||||||||||| | ||||| |||| ||||||||||    
T  20381927 cttcagattggcaagccaccaccatataaaacccgctctcagggaggatcaaattcaggtgataaatgaatttt 20382000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 11293010 - 11292941
Alignment:
Q  157 agattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaatttt 226  Q
    ||||||| |||||||| || |||||||||| ||||||||||||||| | ||||| |||| ||||||||||    
T  11293010 agattggcaagccaccaccatataaaacccgctctcagggaggatcaaattcaggtgataaatgaatttt 11292941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 38993589 - 38993526
Alignment:
Q  159 attggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaa 222  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||| | ||||| ||| |||||||    
T  38993589 attggcaagccaccgccatataaaacccgctctcagggaggatcaaattcaggtgaccaatgaa 38993526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 20951968 - 20952037
Alignment:
Q  153 cttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaa 222  Q
    ||||||||||| ||||||||||| |||||||||| |||||| |||||||| | ||||| ||| |||||||    
T  20951968 cttcagattggcaagccaccgccatataaaacccgctctcaaggaggatcaaattcaggtgaccaatgaa 20952037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 10288063 - 10288024
Alignment:
Q  206 ttcagatgatcaatgaattttctttattggaatgactcga 245  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  10288063 ttcaggtgatcaatgaattttctttattggaatgactcga 10288024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 10303779 - 10303737
Alignment:
Q  207 tcagatgatcaatgaattttctttattggaatgactcgacgag 249  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  10303779 tcaggtgatcaatgaattttcgttattggaatgactcgacgag 10303737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 27206856 - 27206783
Alignment:
Q  153 cttcagattggtaagccaccgccttataaaacccactctcagggaggatccacttcagatgatcaatgaatttt 226  Q
    ||||||||||| |||||||| || |||||||||| ||||||||||| ||| | ||||| |||| ||||||||||    
T  27206856 cttcagattggcaagccaccaccatataaaacccgctctcagggagaatcaaattcaggtgataaatgaatttt 27206783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University