View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11757_high_20 (Length: 235)
Name: NF11757_high_20
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26832569 - 26832795
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832569 |
accaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagca |
26832668 |
T |
|
| Q |
101 |
tcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26832669 |
tcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcat |
26832768 |
T |
|
| Q |
201 |
actttatattcacacctttgcttctcc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
26832769 |
actttatattcacacctttgcttctcc |
26832795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26785851 - 26786070
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||||||||| |
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| T |
26785851 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagca |
26785950 |
T |
|
| Q |
101 |
tcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcat |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||| |
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| T |
26785951 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
26786050 |
T |
|
| Q |
201 |
actttatattcacacctttg |
220 |
Q |
| |
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||||||| |||||||||||| |
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| T |
26786051 |
actttatgttcacacctttg |
26786070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26791591 - 26791810
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagca |
100 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
26791591 |
accaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagca |
26791690 |
T |
|
| Q |
101 |
tcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcat |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||| |
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|
| T |
26791691 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
26791790 |
T |
|
| Q |
201 |
actttatattcacacctttg |
220 |
Q |
| |
|
||||||| |||||||||||| |
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|
| T |
26791791 |
actttatgttcacacctttg |
26791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 26822492 - 26822711
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||| ||||| | ||||| |||||||| ||||||||||||||| |
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|
| T |
26822492 |
accaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatcagca |
26822591 |
T |
|
| Q |
101 |
tcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcat |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||| |
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|
| T |
26822592 |
tcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcat |
26822691 |
T |
|
| Q |
201 |
actttatattcacacctttg |
220 |
Q |
| |
|
||||||| |||||||||||| |
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|
| T |
26822692 |
actttatgttcacacctttg |
26822711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 41546352 - 41546231
Alignment:
| Q |
86 |
ggttgaaaatcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctat |
185 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||| |||||||| || || | ||||| ||||||||||||||||||| |
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|
| T |
41546352 |
ggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttctat |
41546253 |
T |
|
| Q |
186 |
tgtccctaacttcatactttat |
207 |
Q |
| |
|
| ||||| | ||||||||||| |
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|
| T |
41546252 |
tttcccttatctcatactttat |
41546231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 41917661 - 41917439
Alignment:
| Q |
1 |
accaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagca |
100 |
Q |
| |
|
|||||| ||||| ||||| |||| ||| ||||| |||||||||| || | || || | ||| ||||| | ||||||||| |||||||||||||||||| |
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|
| T |
41917661 |
accaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaatcagca |
41917562 |
T |
|
| Q |
101 |
tcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaacttcat |
200 |
Q |
| |
|
||||| || ||||||| ||||||||| |||||||||||||| |||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
41917561 |
tcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaacttcat |
41917462 |
T |
|
| Q |
201 |
actttatattcacacctttgctt |
223 |
Q |
| |
|
||||||||||||| ||||||||| |
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|
| T |
41917461 |
actttatattcactcctttgctt |
41917439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 20239064 - 20239218
Alignment:
| Q |
20 |
tgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaatcagcatcaaagatagcaacataat |
119 |
Q |
| |
|
||||||||| |||| ||||||||| |||||| ||||| |||| || | |||||||||||| || ||||||||||||||| || ||||||| | |
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|
| T |
20239064 |
tgaacaagagcaatttcaggattaccaacaagaaaaggaatggctcttctaagaaaatcaggaggaggactaaaatcagcatcaaatatgacaacatatt |
20239163 |
T |
|
| Q |
120 |
cacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgta |
174 |
Q |
| |
|
|||| || || ||||||||| |||| | ||| || || ||||||||||||||||| |
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|
| T |
20239164 |
cacaatgcttgacatagctacgttttagtccttctttcaatgcacctgctttgta |
20239218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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