View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_high_21 (Length: 227)
Name: NF11757_high_21
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 47571151 - 47571259
Alignment:
| Q |
101 |
accattggaactattggatcctcaagaaagatttttgtctcaaggatatataaaatgcatccatattgcgttattatgtgtacaagaagacgccaaacga |
200 |
Q |
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| T |
47571151 |
accattggaacaattggatcctcaagaaagatttttgtctcaaggatatataagatgcatccatattgcgttattatgtgtacaagaagacgccaaacga |
47571250 |
T |
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| Q |
201 |
tacacactc |
209 |
Q |
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||||||||| |
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| T |
47571251 |
tacacactc |
47571259 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 47571035 - 47571109
Alignment:
| Q |
27 |
aaatgatcttacggttaggagtgaaggagtatatggtatgagagtggagatgatagagacaacgagatttgacta |
101 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47571035 |
aaatgatcttacggttaggagggaatgagtatatggtatgagagtggagatgatagagacaacgagatttgacta |
47571109 |
T |
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