View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_high_3 (Length: 521)
Name: NF11757_high_3
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 312
Target Start/End: Original strand, 27260674 - 27260962
Alignment:
| Q |
25 |
gttagagtttcagacaagcatgagttcaaaggaaaactattatgttcaaagttagttagaaatatatcaagcaacatattttattttttggcagacaaag |
124 |
Q |
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| T |
27260674 |
gttagagtttcagagaagcatgagttcaaaggaaaactattatgttcaaagttagttagaaacatatcaagcaacatattttattttttggcagacaaag |
27260773 |
T |
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| Q |
125 |
cagattgggcagtggctggctgtgggacatataaatccaaatgtggctgcttaatttggatcacatatggattgtcgtatacgtgtataatttccaagaa |
224 |
Q |
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| T |
27260774 |
cagattgggcagtggctggctgtgggacatataaatccaaatgtggctgcttaatttggatcacatatggattgtcgtatacctgtataattttcaagaa |
27260873 |
T |
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| Q |
225 |
gatcaaactcaacaccttca-nnnnnnnngaaagaactcaatatcttcatttgtttggatgaaactcacactcactagaagaggttgca |
312 |
Q |
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| T |
27260874 |
gatcaaactcaataccttcatttttttttgaaagaattcagtatcttcatttgtttggatgaaactcacactcactagaagaggttgca |
27260962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 311 - 521
Target Start/End: Original strand, 27260994 - 27261204
Alignment:
| Q |
311 |
caaccatatacatctgtatgtaattatgcactcagttatggtactaagacatttcaaattatataaactaaaatgaatataagcatttcagattatataa |
410 |
Q |
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| T |
27260994 |
caaccatatacatctgtatgtaattatgcactcagttatggtactaggacatttcaaattatataaactaaaatgaatataagcatttcagattatataa |
27261093 |
T |
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| Q |
411 |
tctgaagtgggaattttcccactccataccaaagtgtttgtttatcatggttgtagggtgcatgagaacttttactcggtgcatcgtcacagagaaaccg |
510 |
Q |
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| T |
27261094 |
tttgaagtgggaattttcccactccataccaaaatgtttgtttatcatggttgtagggtgcatgaaaacttttactcggtgcaccttcacagagaaaccg |
27261193 |
T |
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| Q |
511 |
aatcatgtatc |
521 |
Q |
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| T |
27261194 |
aatcatgtatc |
27261204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 21196615 - 21196552
Alignment:
| Q |
163 |
aaatgtggctgcttaatttggatcacatatggattgtcgtatacgtgtataatttccaagaaga |
226 |
Q |
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| T |
21196615 |
aaatgtggttgcttaattttcatcacatatggattaccgtgtgcgtgtacaatttccaagaaga |
21196552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 31460415 - 31460371
Alignment:
| Q |
368 |
attatataaactaaaatgaatataagcatttcagattatataatc |
412 |
Q |
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| T |
31460415 |
attatataatccaaaatgtatataagcattttagattatataatc |
31460371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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