View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_high_5 (Length: 469)
Name: NF11757_high_5
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_high_5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 87 - 469
Target Start/End: Original strand, 26832206 - 26832586
Alignment:
| Q |
87 |
catgacgatgacttctcatgacagactgtatccaaatcaaatatgcactcttttaagtagcattttccaccttttccatgttactttttatgcacacaaa |
186 |
Q |
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| T |
26832206 |
catgacgatgacttctcatgacagactgtatccaaatcaaatatgcactcttttaagtagcattttccaccttttccatgttactttttatgcacacaaa |
26832305 |
T |
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| Q |
187 |
agaaaccaaccaaaggaagaaaataacactagacttctttggagatcataaaaagaagcatacgtggctaaataagaaagccattcaagtactaagtggg |
286 |
Q |
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| T |
26832306 |
agaaaccaaccaaaggaagaaaataacactagacttctttgaagatcat-aaaagaagcatacgtggctaaataagaaagccattcaagtactaagtggg |
26832404 |
T |
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| Q |
287 |
acttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagattgattttattgttttgtagctctttatggcacaagttag |
386 |
Q |
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| T |
26832405 |
acttacttcagccacggccaaaatctaacattctcaaaataaacaaaatctaccgacagtttgattttattgttttgcggctctttagggcacaagttag |
26832504 |
T |
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| Q |
387 |
catgacccctaaaagataaacaaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagcgagc |
469 |
Q |
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| T |
26832505 |
catga-ccctaaaagataaataaaagaagttaatgtgattataagaaggagaagaaaaggaaattaccaaacttccagcgagc |
26832586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26832153 - 26832197
Alignment:
| Q |
1 |
caactcaatgcagccataaatgaagtctaagcattcataatactc |
45 |
Q |
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| T |
26832153 |
caactcaatgcagccataaatgaagtcttagcatccataatactc |
26832197 |
T |
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