View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_high_7 (Length: 448)
Name: NF11757_high_7
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 3075453 - 3075083
Alignment:
| Q |
1 |
agagaaagaagtaccgttataagagggaactcgttccagaaccgattctgctttgactatgagaagaatgaatatatggcaacaaaacttgaagaatctg |
100 |
Q |
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| T |
3075453 |
agagaaagaagtaccgttataagagggaactcgttccagaaccgattctgctttgactatgagaagaatgaatatatggcaacaaaacttgaagaatctg |
3075354 |
T |
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| Q |
101 |
caaacaagtggaaacttgttgctgcgcctgctctaatgacaatatgttttgttcttttgcttttcatcccaatgcagtggttatactcgattgttttata |
200 |
Q |
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| T |
3075353 |
caaacaagtggaaacttgttgctgcgcctgctctaatgacaatatgttttgttcttttgcttttcatcccaatgcagtggttatactcgattgttttata |
3075254 |
T |
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| Q |
201 |
ttatatatcaaatctttctgttttatacaatgtttatagttttgtctgttctaaattgcaatgaattttaggctataatgacggtgaagcactggtcgac |
300 |
Q |
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| T |
3075253 |
ttatatatcaaatctttctgttttatacaatgtttatagttttgtctgttctaaattgcaatgaattttaggctataatgacggtgaagcactggtcgac |
3075154 |
T |
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| Q |
301 |
tctgaatccaggatcaacatcagtcggaaaaccagcttttcatccaactaatgttacattgagaggcatat |
371 |
Q |
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| T |
3075153 |
tctgaatccaggatcaacatcagtcggaaaacaagcttttcatccaactactgttacattgagaggcatat |
3075083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 367 - 428
Target Start/End: Complemental strand, 3074908 - 3074847
Alignment:
| Q |
367 |
catatcatgtgagtaagtctttatcaaaggttgcctggatatatttcttcgtagtcagtgct |
428 |
Q |
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| T |
3074908 |
catatcatgtgagtaagtctttatcaaaggttgcctggatatatttcttcgtagtcagtgct |
3074847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 388
Target Start/End: Complemental strand, 21157055 - 21156967
Alignment:
| Q |
300 |
ctctgaatccaggatcaacatcagtcggaaaaccagcttttcatccaactaatgttacattgagaggcatatcatgtgagtaagtcttt |
388 |
Q |
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| T |
21157055 |
ctctgaatccaggatcaacatcaatcggaaaaccagcttttcatccaactactgttgcattgaaaggcatatcatgtgaataggtcttt |
21156967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 424
Target Start/End: Complemental strand, 21156781 - 21156743
Alignment:
| Q |
386 |
tttatcaaaggttgcctggatatatttcttcgtagtcag |
424 |
Q |
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| T |
21156781 |
tttatcaaaggttgcctggatatatttcttggtagtcag |
21156743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 21157525 - 21157475
Alignment:
| Q |
18 |
tataagagggaactcgttccagaaccgattctgctttgactatgagaagaa |
68 |
Q |
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| T |
21157525 |
tataagagggaactcactccagaaccgattccgcttcgactatgagaagaa |
21157475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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