View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_high_8 (Length: 443)
Name: NF11757_high_8
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 208 - 425
Target Start/End: Original strand, 41043176 - 41043394
Alignment:
| Q |
208 |
ttacttgtatatgccaggatttatattaatcataatccattgattattttgactctttatagaatcaatggcagcttgaattgtttggaatgctcctttt |
307 |
Q |
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| T |
41043176 |
ttacttatatatgccaggatttatattaatcataatccattgattattttgactctttatagaatcaatggcagcttgaattgtttggaatgctcctttt |
41043275 |
T |
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| Q |
308 |
ccttgttggtcaacaatgatggtatttgcaacttgattcccaccacagtctatagctacaccaaaataaaaataactaatatacaatact-aaatggaac |
406 |
Q |
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| T |
41043276 |
ccttgttggtcaacaatgatggtatttgcaacttgattcccaccacaatctatagctacaccaaaataaaaataactaatatacaatactaaaatggaac |
41043375 |
T |
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| Q |
407 |
atcattggtggtgccatct |
425 |
Q |
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| T |
41043376 |
atcattggtggtgccatct |
41043394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 41042971 - 41043148
Alignment:
| Q |
1 |
tgtagcactcatggatgtgccaactttatgagatgaatcgtcgtaagtaatgattgtgttattactacctgatccttttaaaataatgcacgactttcta |
100 |
Q |
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| T |
41042971 |
tgtagcactcatggatgtgccaactttatgagatgaatcgtcgtaagtaatgattgtgttattgctacctgatccttttaaaataatgcacgactttcta |
41043070 |
T |
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| Q |
101 |
tcaggtataagaactttttccctgcacaattttagattgtgaaaacataaaataaatttcaaattacttgtagtgtct |
178 |
Q |
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| T |
41043071 |
tcaggtataagaactttttccctgcacaattttagattgtgaaaacataaaataaatttcaaattacttgtagtgtct |
41043148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 38302911 - 38303019
Alignment:
| Q |
263 |
tttatagaatcaatggcagcttgaattgtttggaatgctccttttccttgttggtcaacaatgatggtatttgcaacttgattcccaccacagtctatag |
362 |
Q |
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||||| ||||||||||||| ||||| ||| |||||| || |||||||||| |||||||| |||||||||| ||| ||||| ||||||||||| || | |
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| T |
38302911 |
tttattgaatcaatggcaggctgaatcattttgaatgccccccttccttgttgatcaacaataatggtatttgtaacatgatttccaccacagtcaatgg |
38303010 |
T |
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| Q |
363 |
ctacaccaa |
371 |
Q |
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||| ||||| |
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| T |
38303011 |
ctataccaa |
38303019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 354
Target Start/End: Original strand, 38307080 - 38307213
Alignment:
| Q |
221 |
ccaggatttatattaatcataatccattgattattttgactctttatagaatcaatggcagcttgaattgtttggaatgctccttttccttgttggtcaa |
320 |
Q |
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||||||||||| | |||| ||| ||| |||||||| | | || ||| |||||||||||| |||||| ||| |||||||||| |||||||||| |||| |
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| T |
38307080 |
ccaggatttatgtgaatcttaacccactgattattgttattcactattgaatcaatggcatgttgaatcattttgaatgctcctcttccttgttgatcaa |
38307179 |
T |
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| Q |
321 |
caatgatggtatttgcaacttgattcccaccaca |
354 |
Q |
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||| ||| |||||| ||| ||||| |||||||| |
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| T |
38307180 |
caacaatgatatttgtaacatgatttccaccaca |
38307213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 38295623 - 38295731
Alignment:
| Q |
263 |
tttatagaatcaatggcagcttgaattgtttggaatgctccttttccttgttggtcaacaatgatggtatttgcaacttgattcccaccacagtctatag |
362 |
Q |
| |
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||||| ||||||||||||| ||||| ||| |||| | |||||||||||||| |||||||| |||| |||| ||| ||||| ||||||||||| || | |
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| T |
38295623 |
tttattgaatcaatggcaggctgaatctttttgaattccccttttccttgttgatcaacaataatggcatttctaacatgatttccaccacagtcaatgg |
38295722 |
T |
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| Q |
363 |
ctacaccaa |
371 |
Q |
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||| ||||| |
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| T |
38295723 |
ctataccaa |
38295731 |
T |
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