View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11757_low_1 (Length: 1159)

Name: NF11757_low_1
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11757_low_1
NF11757_low_1
[»] chr6 (36 HSPs)
chr6 (14-531)||(31564316-31564843)
chr6 (590-876)||(31564838-31565117)
chr6 (679-943)||(33414524-33414788)
chr6 (1008-1159)||(31565162-31565313)
chr6 (310-676)||(33385314-33385670)
chr6 (310-676)||(33259583-33259959)
chr6 (704-943)||(33269497-33269740)
chr6 (1008-1159)||(33414308-33414459)
chr6 (679-943)||(33395008-33395274)
chr6 (679-906)||(33258187-33258416)
chr6 (1008-1159)||(33383765-33383916)
chr6 (772-943)||(33383981-33384156)
chr6 (109-273)||(33416366-33416536)
chr6 (484-676)||(33416152-33416345)
chr6 (677-849)||(33278972-33279139)
chr6 (491-676)||(24631975-24632161)
chr6 (1008-1118)||(33292802-33292912)
chr6 (1033-1159)||(33351405-33351530)
chr6 (679-783)||(33293090-33293194)
chr6 (1047-1150)||(33258067-33258170)
chr6 (842-932)||(33292988-33293078)
chr6 (1012-1084)||(33269355-33269427)
chr6 (450-632)||(9165228-9165418)
chr6 (23-152)||(33385707-33385837)
chr6 (722-846)||(33280358-33280482)
chr6 (333-439)||(24631864-24631970)
chr6 (447-521)||(29274300-29274376)
chr6 (38-97)||(33281320-33281376)
chr6 (1034-1074)||(31567428-31567468)
chr6 (679-725)||(28873045-28873091)
chr6 (26-80)||(33416538-33416592)
chr6 (38-97)||(33301947-33302003)
chr6 (341-416)||(281808-281881)
chr6 (590-631)||(33282241-33282282)
chr6 (590-631)||(33398042-33398083)
chr6 (590-631)||(33408952-33408993)
[»] chr2 (9 HSPs)
chr2 (679-900)||(17447760-17447982)
chr2 (1008-1125)||(17445747-17445864)
chr2 (26-155)||(17443374-17443503)
chr2 (871-943)||(17445607-17445679)
chr2 (310-375)||(17443537-17443602)
chr2 (447-528)||(34339039-34339122)
chr2 (480-520)||(3102617-3102657)
chr2 (338-415)||(14299588-14299663)
chr2 (447-508)||(7103554-7103615)
[»] scaffold0428 (8 HSPs)
scaffold0428 (679-906)||(2308-2537)
scaffold0428 (310-546)||(3802-4047)
scaffold0428 (677-849)||(15114-15281)
scaffold0428 (1047-1150)||(2188-2291)
scaffold0428 (722-846)||(13771-13895)
scaffold0428 (590-676)||(3704-3791)
scaffold0428 (38-97)||(12876-12932)
scaffold0428 (590-631)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (118-272)||(30653203-30653360)
chr5 (399-521)||(11684346-11684468)
chr5 (380-445)||(30653373-30653438)
chr5 (447-528)||(32059660-32059742)
chr5 (484-528)||(10391269-10391313)
chr5 (340-391)||(11457158-11457209)
chr5 (489-528)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (338-416)||(13000381-13000457)
chr8 (455-523)||(26717178-26717246)
chr8 (433-519)||(5290566-5290649)
chr8 (465-528)||(26716527-26716590)
chr8 (338-416)||(30191098-30191174)
chr8 (395-481)||(10079082-10079168)
chr8 (395-444)||(30389108-30389157)
chr8 (447-521)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (340-416)||(43115093-43115167)
chr3 (450-528)||(38462197-38462277)
chr3 (448-521)||(22232749-22232824)
chr3 (455-537)||(3015928-3016011)
chr3 (338-416)||(37273171-37273247)
chr3 (317-413)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (340-453)||(3468614-3468725)
chr7 (447-528)||(3610811-3610894)
chr7 (399-520)||(26935573-26935696)
chr7 (484-562)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (465-518)||(44207697-44207750)
chr1 (338-389)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (433-506)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (465-519)||(32920489-32920543)
chr4 (455-522)||(47970240-47970309)
chr4 (435-505)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 14 - 531
Target Start/End: Original strand, 31564316 - 31564843
Alignment:
Q  14 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564316 acctgtggtagtacaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttca 31564415  T
Q  114 gacaaaggctcgagtaatggtttcaatttcatcttatttgct----gtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564416 gacaaaggctcgagtaatggtttcaatttcatcttatttgcttaatgtttctattctaatttttctacatctaatagaagtaaatatgttagacagattt 31564515  T
Q  210 gaatttatacatgtatttcaatttttacatgt------aaaagagaaaaaatgaattatacttccattttgcccatcttctcatattgttttgcctcttg 303  Q
    ||||||||||||||||||||||||||||||||      |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31564516 gaatttatacatgtatttcaatttttacatgtaaatgtaaaagagaaaaaattaattatacttccattttgcccatcttttcatattgttttgcctcttg 31564615  T
Q  304 tggattgatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttt 403  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31564616 tggattgatatatttgaacttatacactcatattagcacttgtgagactgtttcgaagagttaatggaaacaactaatgacatgtccacaaaagttgttt 31564715  T
Q  404 tcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacat 503  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  31564716 tcagcttatttccatatgttgtctagaaaagcttatgaaaatcacttgtaggaaaacagtgtgacttcattttatcttgttataaaaatagcttatacat 31564815  T
Q  504 aagcaattttatgataagtgtttatctt 531  Q
    | ||||||||||||||||||||||||||    
T  31564816 atgcaattttatgataagtgtttatctt 31564843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 590 - 876
Target Start/End: Original strand, 31564838 - 31565117
Alignment:
Q  590 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtcccctttgaattgcagcaactatatcaccaacacttgcatgaaaaggcgc 689  Q
    ||||||| |||||||||||||| ||| || |||||||||||||||||   |||||||| ||||||||||       |||||||||| |||||||||||||    
T  31564838 tatctttaaattcttacataagatttctattttttaaatgtctattccaccccctttggattgcagcaa-------accaacacttacatgaaaaggcgc 31564930  T
Q  690 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacat 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  31564931 aagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcat 31565030  T
Q  790 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 876  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565031 tagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 679 - 943
Target Start/End: Complemental strand, 33414788 - 33414524
Alignment:
Q  679 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 778  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||    
T  33414788 tgaaaaggcgcaagcatatctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcac 33414689  T
Q  779 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaag 878  Q
    ||| |||  ||| ||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||    
T  33414688 gatgcacgtattggtgttctaattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaag 33414589  T
Q  879 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 943  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||    
T  33414588 ttgctgcttgtccacaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaag 33414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 1008 - 1159
Target Start/End: Original strand, 31565162 - 31565313
Alignment:
Q  1008 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565162 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 31565261  T
Q  1108 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttc 1159  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31565262 aagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttc 31565313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 310 - 676
Target Start/End: Complemental strand, 33385670 - 33385314
Alignment:
Q  310 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 409  Q
    |||| ||||||||||||  | | |||| ||||||||||| ||||||| |||||||| ||||||||| |  |||||||||||| |||||||||||||||||    
T  33385670 gatgcatttgaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagct 33385571  T
Q  410 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagc 507  Q
    | ||||| ||   ||||||||||||||||||||||| |||||||| | |  |||||||||||||||||||  ||| ||||||||| |||||||||| |||    
T  33385570 tttttccataaactgtctagaaaagcttatgaaaatagcttatagcata--agtatgacttcattttatcttttgttataaaaattgcttatacatcagc 33385473  T
Q  508 aattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaattcttaca 607  Q
    | || ||||  ||||| ||||||| |||| ||| |||||| | ||||           |||||| |||| ||||||||||||||||||||||||||||||    
T  33385472 acttatatgtaaagtgcttatcttataagttttcattaggctgttta-----------tcttaggtttccagcctgttcacctatctttgaattcttaca 33385384  T
Q  608 taaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 676  Q
    |||| ||| ||||  |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33385383 taagatttctaatcgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33385314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 310 - 676
Target Start/End: Complemental strand, 33259959 - 33259583
Alignment:
Q  310 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 409  Q
    |||||||||||||||||| | | |||| ||||||||  | ||||||| |||||||| ||||||||  | ||||||||||||| ||||| ||||||||||     
T  33259959 gatgtatttgaacttatatattgatataagcacttgccaaactgtttggaagagtttatggaaacggctaatgacatgtccataaaagctgttttcagcc 33259860  T
Q  410 tatttccgtatgttgtctagaaaagcttatgaaaatcgcttatag-------gaaaacagtatgacttcattttatctt--gctataaaaatagcttata 500  Q
      ||| | |||  ||| ||||||||||||||||||| ||||||||       |||||||||||||||||| ||||||||  | |||||||||||||||||    
T  33259859 attttacatatactgtatagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcaatttatcttttgttataaaaatagcttata 33259760  T
Q  501 cataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacctatctttgaat 600  Q
    |||||||| || ||||  |||   ||||||| ||||||| ||||||| | ||||||||||| | ||||||| |||| |||||  | || |||||||||||    
T  33259759 cataagcacttatatgtaaagctcttatcttataagcttgaattaggctgtttatccaaacaaggtcttaggtttccagccttcttacatatctttgaat 33259660  T
Q  601 tcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 676  Q
    ||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33259659 tcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33259583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 704 - 943
Target Start/End: Complemental strand, 33269740 - 33269497
Alignment:
Q  704 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 799  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  800 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 899  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T
Q  900 agtttgtatctattgaagatattcctaaaaccactgtgacgaag 943  Q
    |||||||||||||||||||||||||  |||| | ||||||||||    
T  33269540 agtttgtatctattgaagatattcccgaaactattgtgacgaag 33269497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 1008 - 1159
Target Start/End: Complemental strand, 33414459 - 33414308
Alignment:
Q  1008 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1107  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  33414459 ttgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagacttggtgaggca 33414360  T
Q  1108 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttc 1159  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||    
T  33414359 aagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttc 33414308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 679 - 943
Target Start/End: Complemental strand, 33395274 - 33395008
Alignment:
Q  679 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 778  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||    
T  33395274 tgaaaaggcccaatcataccttagaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgac 33395175  T
Q  779 gattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 876  Q
    ||| ||| |||   |||||| ||||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| |||||||    
T  33395174 gatgcacgcatctatgttctgattgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgca 33395075  T
Q  877 agttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 943  Q
    |   ||||||||||||||||||||||||||||||||||||| ||||| | |||||| || |||||||    
T  33395074 ataggctgcttgtccacaggttcagtttgtatctattgaaggtattcttgaaaccattgcgacgaag 33395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 679 - 906
Target Start/End: Complemental strand, 33258416 - 33258187
Alignment:
Q  679 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 777  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  33258416 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 33258317  T
Q  778 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 877  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  33258316 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 33258217  T
Q  878 gttgctgctt-gtccacaggttcagtttgt 906  Q
    || |||  || |||||||||||||||||||    
T  33258216 gtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 1008 - 1159
Target Start/End: Complemental strand, 33383916 - 33383765
Alignment:
Q  1008 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1107  Q
    ||||||||||||||||||||||||| |||  ||| || |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  33383916 ttgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaagacttggtgaggca 33383817  T
Q  1108 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttc 1159  Q
    |||||||||||||||||||||||||||||  |   |||||||||||||||||    
T  33383816 aagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttc 33383765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 772 - 943
Target Start/End: Complemental strand, 33384156 - 33383981
Alignment:
Q  772 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 871  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  872 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 943  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaag 33383981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 109 - 273
Target Start/End: Complemental strand, 33416536 - 33416366
Alignment:
Q  109 cttcagacaaaggctcgagtaatggtttcaatttcatcttatttgctg----tttctattctaatttttctacatctaatagaagtaaatatgttagaca 204  Q
    |||||||  ||||||||||||| |||||| |||||||||||||||||     |||| ||||| ||||||||| ||| |||||||||||||||||| ||||    
T  33416536 cttcagatgaaggctcgagtaaaggtttccatttcatcttatttgcttcatatttcaattctcatttttctatatcaaatagaagtaaatatgttggaca 33416437  T
Q  205 gatttgaatttatacatgtatttcaatttttacatgtaaaagagaaaaaatga--attatacttccatttt 273  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||  | ||||||||||||||    
T  33416436 gatttgaatttatacatgtatttcagtttttacatgtaaaagagaagaaaagatgaatatacttccatttt 33416366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 484 - 676
Target Start/End: Complemental strand, 33416345 - 33416152
Alignment:
Q  484 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctg 583  Q
    ||||||||||||||||||||||||| ||| || || || | ||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||| |||    
T  33416345 tataaaaatagcttatacataagcactttgataatgagcgcttatcttataagctttaattaggttgtttatccaaacaaggtcatggttttctagtctg 33416246  T
Q  584 ttcacctatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 676  Q
    |||||||||||||||||| |||  ||||  || ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  33416245 ttcacctatctttgaatttttagttaagacttctaattgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 33416152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 677 - 849
Target Start/End: Complemental strand, 33279139 - 33278972
Alignment:
Q  677 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 776  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  33279139 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 33279045  T
Q  777 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 849  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279044 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 491 - 676
Target Start/End: Original strand, 24631975 - 24632161
Alignment:
Q  491 atagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattaggttatttatccaaactaagtcttagttttctagcctgttcacct 590  Q
    ||||||||| |||||||| || ||||||||| ||||||||| |||  |||||||| |||  |||||||||| | |||||||||||| | | ||||||||     
T  24631975 atagcttatgcataagcacttatatgataagcgtttatcttataatatttaattaagttgcttatccaaacgaggtcttagttttccaacttgttcacca 24632074  T
Q  591 atctttgaattcttacataaggtttgtaatttttaaatgtctattctg-tcccctttgaattgcagcaactatatcaccaacacttg 676  Q
    |||||||||||| |||||||| ||| ||||| |||||||||| ||||| |||  |||| |||||||||||| |||||||| ||||||    
T  24632075 atctttgaattcctacataagatttctaattgttaaatgtctgttctgctcctgtttggattgcagcaactttatcaccagcacttg 24632161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 1008 - 1118
Target Start/End: Complemental strand, 33292912 - 33292802
Alignment:
Q  1008 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1107  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||   | |||||||||| ||||||    
T  33292912 ttgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaagacttggagaggca 33292813  T
Q  1108 aagtatagctg 1118  Q
    |||||||||||    
T  33292812 aagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 1033 - 1159
Target Start/End: Complemental strand, 33351530 - 33351405
Alignment:
Q  1033 attaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaac 1132  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  33351530 attaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaac 33351432  T
Q  1133 attactgtgcggcgttttgttcggttc 1159  Q
    ||||  | |||||||||||||||||||    
T  33351431 attaaagcgcggcgttttgttcggttc 33351405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 679 - 783
Target Start/End: Complemental strand, 33293194 - 33293090
Alignment:
Q  679 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcac 778  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | |||||||||||||    
T  33293194 tgaaaaggtgaaagcatacctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcac 33293095  T
Q  779 gattc 783  Q
    |||||    
T  33293094 gattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 1047 - 1150
Target Start/End: Complemental strand, 33258170 - 33258067
Alignment:
Q  1047 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 1146  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 33258071  T
Q  1147 tttt 1150  Q
    ||||    
T  33258070 tttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 842 - 932
Target Start/End: Complemental strand, 33293078 - 33292988
Alignment:
Q  842 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 932  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  |||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaacca 33292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 1012 - 1084
Target Start/End: Complemental strand, 33269427 - 33269355
Alignment:
Q  1012 tgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgtt 1084  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  33269427 tgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 450 - 632
Target Start/End: Complemental strand, 9165418 - 9165228
Alignment:
Q  450 tataggaaaacagtatgacttcatttta--tcttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagctttaattagg 547  Q
    |||||||||||||||||||||||| |||  | ||| ||||||||||||||||||||||| | || |||| ||||   ||||||| |||||||||||||||    
T  9165418 tataggaaaacagtatgacttcatcttaccttttgttataaaaatagcttatacataagtacttatatg-taagcacttatcttataagctttaattagg 9165320  T
Q  548 ttatttatccaaac-------taagtcttagttttctagcctgttcacctatctttgaattcttacataaggtttgtaatttttaaatgtct 632  Q
       |||||||||||       ||  || ||| |||  |||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  9165319 gcgtttatccaaacaaggtcatagctcataggtttgcagcctgttcacctatctttgaatttttacataagatttctaattgttaaatgtct 9165228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 23 - 152
Target Start/End: Complemental strand, 33385837 - 33385707
Alignment:
Q  23 agtacaagttgaagatgaagaagttgcaattgcatccgaga-caaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaagg 121  Q
    |||||||||||||| ||||||||||||||||||||   | | ||||||||| | ||||||| ||||||||||||||||| |||||  | |||||  ||||    
T  33385837 agtacaagttgaaggtgaagaagttgcaattgcattaaaaaacaaacaacagcgtatctaactctaatggacaaaccggaattacagcgtcagatgaagg 33385738  T
Q  122 ctcgagtaatggtttcaatttcatcttattt 152  Q
    || ||| || |||| ||||||||||||||||    
T  33385737 cttgagcaaaggttgcaatttcatcttattt 33385707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 722 - 846
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  722 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 821  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  822 actttatcggtagaagtgagaaatt 846  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 333 - 439
Target Start/End: Original strand, 24631864 - 24631970
Alignment:
Q  333 atattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaa 432  Q
    |||| ||||||||||| ||| ||| |||||||| |||||||||||  |||| ||||||| ||||| |||||| |||||||||||  | | ||| ||||||    
T  24631864 atataagcacttgtgaaactatttggaagagtttatggaaacaactcatgatatgtccataaaagctgtttttagcttatttccaaaagctgtttagaaa 24631963  T
Q  433 agcttat 439  Q
    |||||||    
T  24631964 agcttat 24631970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 447 - 521
Target Start/End: Original strand, 29274300 - 29274376
Alignment:
Q  447 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 521  Q
    ||||||| ||||||| | |||||| ||||||||||  |||||| |||||||||||||||||||| || |||||||||    
T  29274300 gcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgataag 29274376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 33281376 - 33281320
Alignment:
Q  38 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 97  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33281376 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 33281320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1034 - 1074
Target Start/End: Original strand, 31567428 - 31567468
Alignment:
Q  1034 ttaggagagcttgctcttctagagcagcctttcattaagga 1074  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31567428 ttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 679 - 725
Target Start/End: Original strand, 28873045 - 28873091
Alignment:
Q  679 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctg 725  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||    
T  28873045 tgaaaaggcgtaagcatacctcagataaaagggtctctcatctgctg 28873091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 33416592 - 33416538
Alignment:
Q  26 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatct 80  Q
    |||||||||||||||||  |||||||||||||| || ||||||| ||||||||||    
T  33416592 acaagttgaagatgaagcggttgcaattgcatctgaaacaaacagcaacttatct 33416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 33302003 - 33301947
Alignment:
Q  38 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 97  Q
    |||||| ||||| ||||||||||||||||||| ||   ||||||||||||||||||||||    
T  33302003 tgaagaggttgctattgcatccgagacaaacatca---tatctaattctaatggacaaac 33301947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 341 - 416
Target Start/End: Original strand, 281808 - 281881
Alignment:
Q  341 acttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 416  Q
    |||||||||||||||| | |||| |||||||| ||||  ||||||||||   | ||||||||||||||||||||||    
T  281808 acttgtgagactgtttgggagagctaatggaagcaacttatgacatgtc--tataagttgttttcagcttatttcc 281881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 33282282 - 33282241
Alignment:
Q  590 tatctttgaattcttacataaggtttgtaatttttaaatgtc 631  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33282282 tatcgttgaattcttacataagatttctaatttttaaatgtc 33282241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 33398083 - 33398042
Alignment:
Q  590 tatctttgaattcttacataaggtttgtaatttttaaatgtc 631  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33398083 tatcgttgaattcttacataagatttataatttttaaatgtc 33398042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 33408993 - 33408952
Alignment:
Q  590 tatctttgaattcttacataaggtttgtaatttttaaatgtc 631  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  33408993 tatcgttgaattcttacataagatttataatttttaaatgtc 33408952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 3e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 679 - 900
Target Start/End: Original strand, 17447760 - 17447982
Alignment:
Q  679 tgaaaaggcgcaagcatacctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattca 777  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||    
T  17447760 tgaaaaggcgcaagcatacctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattca 17447859  T
Q  778 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 877  Q
    |||| ||| |||  ||| |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| |||||||||||||||||    
T  17447860 cgatgcacgcatcggtggtctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaa 17447959  T
Q  878 gttgctgcttgtccacaggttca 900  Q
    || ||||||| ||||||||||||    
T  17447960 gtggctgcttttccacaggttca 17447982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 1008 - 1125
Target Start/End: Original strand, 17445747 - 17445864
Alignment:
Q  1008 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 1107  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||    
T  17445747 ttgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggca 17445846  T
Q  1108 aagtatagctgccattgg 1125  Q
    |||||||||||| |||||    
T  17445847 aagtatagctgctattgg 17445864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 17443374 - 17443503
Alignment:
Q  26 acaagttgaagatgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaaccggcattacttcttcagacaaaggctcg 125  Q
    ||||||||||  ||||||||||||||||||||  || ||||||||   | ||||||| ||||||||||||||| |||||||  |||||||  |||||| |    
T  17443374 acaagttgaacgtgaagaagttgcaattgcatttgaaacaaacaatggcgtatctaactctaatggacaaaccagcattacagcttcagatgaaggcttg 17443473  T
Q  126 agtaatggtttcaatttcatcttatttgct 155  Q
    |  || |||| |||||||||||||||||||    
T  17443474 accaaaggttgcaatttcatcttatttgct 17443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 871 - 943
Target Start/End: Original strand, 17445607 - 17445679
Alignment:
Q  871 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 943  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaag 17445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 17443537 - 17443602
Alignment:
Q  310 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaaca 375  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| |||||||||    
T  17443537 gatgtatttgaacttatatactgatataagcacttgtgagactgtttggaagagtttatggaaaca 17443602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 447 - 528
Target Start/End: Complemental strand, 34339122 - 34339039
Alignment:
Q  447 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 528  Q
    ||||||| ||||||||| |||||| ||||||||||  |||||| ||| || ||||||||||||| || ||||||||||||||||    
T  34339122 gcttatacgaaaacagtctgactttattttatctttagctatagaaaaagtttatacataagcacttatatgataagtgtttat 34339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 480 - 520
Target Start/End: Complemental strand, 3102657 - 3102617
Alignment:
Q  480 ttgctataaaaatagcttatacataagcaattttatgataa 520  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  3102657 ttgctataaaaatagcttatacataagcagttatatgataa 3102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 415
Target Start/End: Original strand, 14299588 - 14299663
Alignment:
Q  338 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttc 415  Q
    |||||||| | |||||||| |||||||| |||||||||||  ||||||| |||| | |  ||||||||||||||||||    
T  14299588 agcacttgagggactgtttggaagagtttatggaaacaacttatgacatatccataca--ttgttttcagcttatttc 14299663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 7103554 - 7103615
Alignment:
Q  447 gcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagca 508  Q
    |||||||  |||||||| |||||| ||||||||||| |||||| |||| || ||||||||||    
T  7103554 gcttatattaaaacagtttgactttattttatcttgttataaatatagtttctacataagca 7103615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 5e-50; HSPs: 8)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 679 - 906
Target Start/End: Complemental strand, 2537 - 2308
Alignment:
Q  679 tgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattca 777  Q
    ||||||| |||||||||| ||||  ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || ||     
T  2537 tgaaaagccgcaagcatatctcatcaaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcg 2438  T
Q  778 cgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaa 877  Q
    ||||||||||||| |||||||||||||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | |||||||||||||||    
T  2437 cgattcacacattggtgttctaattgaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaa 2338  T
Q  878 gttgctgctt-gtccacaggttcagtttgt 906  Q
    || |||  || |||||||||||||||||||    
T  2337 gtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 310 - 546
Target Start/End: Complemental strand, 4047 - 3802
Alignment:
Q  310 gatgtatttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagct 409  Q
    |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||| ||||||||  |  |||||||||||| ||||| ||||||||||     
T  4047 gatgtatttgaacttatatattgatataagcacttgtgagactgtttggaagagtttatggaaacggctcatgacatgtccataaaagctgttttcagcc 3948  T
Q  410 tatttccgtatgttgtctagaaaagcttatgaaaatcgct-------tataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttata 500  Q
      ||| | |||  ||||||||||||||||||||||| |||       ||||||||||||||||||||||| ||||||  ||| ||||||||||||||| |    
T  3947 attttacatatactgtctagaaaagcttatgaaaatagcttatagcatataggaaaacagtatgacttcagtttatcttttgttataaaaatagcttaca 3848  T
Q  501 cataagcaattttatgataagtgtttatcttgtaagctttaattag 546  Q
    |||||||| || ||||  ||| | ||||||| ||||||| ||||||    
T  3847 cataagcacttatatgtaaagcgcttatcttataagcttgaattag 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 677 - 849
Target Start/End: Original strand, 15114 - 15281
Alignment:
Q  677 catgaaaaggcgcaagcatacctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattc 776  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||    
T  15114 catgaaaaggcgcaagcataccttagaaaaa-gggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattc 15208  T
Q  777 acgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 849  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15209 acgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 1047 - 1150
Target Start/End: Complemental strand, 2291 - 2188
Alignment:
Q  1047 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 1146  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 2192  T
Q  1147 tttt 1150  Q
    ||||    
T  2191 tttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 722 - 846
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  722 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 821  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  822 actttatcggtagaagtgagaaatt 846  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 590 - 676
Target Start/End: Complemental strand, 3791 - 3704
Alignment:
Q  590 tatctttgaattcttacataaggtttgtaatttttaaatgtctattctgtc-ccctttgaattgcagcaactatatcaccaacacttg 676  Q
    |||||||||||||||||||||| ||| || || |||||||||| ||| | | ||||||| ||||||||||||||||||||| ||||||    
T  3791 tatctttgaattcttacataagatttatagttgttaaatgtctgttccgccgccctttggattgcagcaactatatcaccagcacttg 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 12876 - 12932
Alignment:
Q  38 tgaagaagttgcaattgcatccgagacaaacaacaacttatctaattctaatggacaaac 97  Q
    |||||| ||||||||||||||||||||||||| ||   ||||||||||||||||||||||    
T  12876 tgaagaggttgcaattgcatccgagacaaacagca---tatctaattctaatggacaaac 12932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 590 - 631
Target Start/End: Original strand, 11970 - 12011
Alignment:
Q  590 tatctttgaattcttacataaggtttgtaatttttaaatgtc 631  Q
    |||| ||||||||||||||||| ||| |||||||||||||||    
T  11970 tatcgttgaattcttacataagatttctaatttttaaatgtc 12011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 7e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 118 - 272
Target Start/End: Original strand, 30653203 - 30653360
Alignment:
Q  118 aaggctcgagtaatggtttcaatttcatcttatttgc----tgtttctattctaatttttctacatctaatagaagtaaatatgttagacagatttgaat 213  Q
    ||||||||||||| ||||  |||||||||||||||||    |||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||     
T  30653203 aaggctcgagtaaaggttaaaatttcatcttatttgcgtcatgtttctattctaatttttcaacatctaaca-aagtaattatgttagacagatttgaac 30653301  T
Q  214 ttatacatgtatttcaatttttacatgtaaaagagaaaaaatgaattatacttccattt 272  Q
    |||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  30653302 ttatacatgtctttcggtttttacatgtaaaagagaaaaaataaattatacttccattt 30653360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 399 - 521
Target Start/End: Complemental strand, 11684468 - 11684346
Alignment:
Q  399 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagctta 498  Q
    |||||||| |||||||||||| | | || || | ||||||||||||| ||||||| ||||||||| | |||   || ||| ||| |||||||||||||||    
T  11684468 tgttttcaacttatttccgtaagctctccagcatagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagctta 11684369  T
Q  499 tacataagcaattttatgataag 521  Q
    ||||| |||| || |||||||||    
T  11684368 tacattagcacttatatgataag 11684346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 380 - 445
Target Start/End: Original strand, 30653373 - 30653438
Alignment:
Q  380 atgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaat 445  Q
    ||||||||| || ||||| |||||||||||||||||| || | |||||||||||||||||||||||    
T  30653373 atgacatgttcataaaagctgttttcagcttatttccataagctgtctagaaaagcttatgaaaat 30653438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 447 - 528
Target Start/End: Original strand, 32059660 - 32059742
Alignment:
Q  447 gcttataggaaaacagtatgacttcattttatctt-gctataaaaatagcttatacataagcaattttatgataagtgtttat 528  Q
    ||||||| ||||||||| |||||| |||||||||| | || ||||| |||||||||||||||| || |||||||||| |||||    
T  32059660 gcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgataagtatttat 32059742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 484 - 528
Target Start/End: Complemental strand, 10391313 - 10391269
Alignment:
Q  484 tataaaaatagcttatacataagcaattttatgataagtgtttat 528  Q
    |||||||||||||||||| |||||| || ||||||||||||||||    
T  10391313 tataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 11457209 - 11457158
Alignment:
Q  340 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtcca 391  Q
    ||||||||||||||||| |||||| | |||||||||||  ||||||||||||    
T  11457209 cacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtcca 11457158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 489 - 528
Target Start/End: Original strand, 29115328 - 29115367
Alignment:
Q  489 aaatagcttatacataagcaattttatgataagtgtttat 528  Q
    |||||||||||||||||||| ||||||||||| |||||||    
T  29115328 aaatagcttatacataagcacttttatgataaatgtttat 29115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 13000381 - 13000457
Alignment:
Q  338 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 416  Q
    ||||||||||||||| |||  ||||||| |||| ||||||  |||||||||||||  ||||||||||||||||||||||    
T  13000381 agcacttgtgagactatttgcaagagtttatggtaacaacttatgacatgtccac--aagttgttttcagcttatttcc 13000457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 455 - 523
Target Start/End: Complemental strand, 26717246 - 26717178
Alignment:
Q  455 gaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtg 523  Q
    ||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||||||    
T  26717246 gaaaatagtttgactttattttatcttgttataaaattagcttattcagaagcacttatatgataagtg 26717178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 433 - 519
Target Start/End: Complemental strand, 5290649 - 5290566
Alignment:
Q  433 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 519  Q
    |||||||||| || ||||| | ||||||||| |||||  ||||||| ||| |||| |||||||||||||||||||| || |||||||    
T  5290649 agcttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 5290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 465 - 528
Target Start/End: Original strand, 26716527 - 26716590
Alignment:
Q  465 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgataagtgtttat 528  Q
    |||||| |||| |||||| |||| || ||||||||||||||||| || ||| ||||||||||||    
T  26716527 tgactttatttaatcttgttatagaagtagcttatacataagcacttatataataagtgtttat 26716590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 416
Target Start/End: Original strand, 30191098 - 30191174
Alignment:
Q  338 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 416  Q
    ||||||||| ||||||||| | |||| | |||||||||||  |||||||||   ||||| |||||||||||||||||||    
T  30191098 agcacttgttagactgtttgggagagcttatggaaacaacttatgacatgt--tcaaaacttgttttcagcttatttcc 30191174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 395 - 481
Target Start/End: Original strand, 10079082 - 10079168
Alignment:
Q  395 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatctt 481  Q
    |||||||||| ||||| ||||| ||   | || |||| |||| |||||||  ||||||| ||||||||| |||||||||||||||||    
T  10079082 aagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttatacgaaaacagtttgacttcattttatctt 10079168  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 30389157 - 30389108
Alignment:
Q  395 aagttgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaa 444  Q
    |||||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  30389157 aagttgttttcagcttattttcataagttctctaggaaagcttatgaaaa 30389108  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 521
Target Start/End: Original strand, 34788498 - 34788574
Alignment:
Q  447 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataag 521  Q
    ||||||| | ||||||| |||||| ||||||||||  |  ||||||||||||||||| |||||| || |||||||||    
T  34788498 gcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataag 34788574  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 43115167 - 43115093
Alignment:
Q  340 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 416  Q
    ||||||||||| ||||| |||||||| |||||||||||  ||||||||||  || || |||||||||||||||||||    
T  43115167 cacttgtgagattgtttggaagagtttatggaaacaacttatgacatgtc--cataacttgttttcagcttatttcc 43115093  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 450 - 528
Target Start/End: Complemental strand, 38462277 - 38462197
Alignment:
Q  450 tataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 528  Q
    |||| ||||||||| |||||| ||||||||||  | |||| |||||||||||| |||| || || ||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttat 38462197  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 22232824 - 22232749
Alignment:
Q  448 cttataggaaaacagtatgacttcattttatc--ttgctataaaaatagcttatacataagcaattttatgataag 521  Q
    |||||| ||||||||| |||||| ||||||||  ||| |||| ||||||||||||||| |||| || |||||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttatataaatagcttatacatgagcatttatatgataag 22232749  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 455 - 537
Target Start/End: Original strand, 3015928 - 3016011
Alignment:
Q  455 gaaaacagtatgacttcattttatc-ttgctataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc 537  Q
    ||||||||| ||||||||||||||| ||| |||| |||||  | ||||||||||| || ||| |||||||||||| || |||||    
T  3015928 gaaaacagtttgacttcattttatctttgttatagaaataattaatacataagcacttatataataagtgtttatgttataagc 3016011  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 416
Target Start/End: Complemental strand, 37273247 - 37273171
Alignment:
Q  338 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttcc 416  Q
    |||||| |||||||||||| | |||| | |||||||||||  ||||||||||  || |||||||||||| |||||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtc--cataagttgttttcaacttatttcc 37273171  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 24624344 - 24624250
Alignment:
Q  317 ttgaacttatacagtcatattagcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatt 413  Q
    ||||||||||  | ||| |||||||||||| ||||||||| |||||| | ||| ||||| |  |||||||||||| |||   |||||||||||||||    
T  24624344 ttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaa--ctgttttcagcttatt 24624250  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 340 - 453
Target Start/End: Complemental strand, 3468725 - 3468614
Alignment:
Q  340 cacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtccacaaaagttgttttcagcttatttccgtatgttgtctagaaaagcttat 439  Q
    ||||| ||||||||||||| ||||||  |||||||||| |||||||||||  || ||||||||| || |||||||||  | ||| ||||| | || ||||    
T  3468725 cacttttgagactgtttcggagagttgttggaaacaactaatgacatgtc--cataagttgtttccaacttatttccacaagttctctaggatagattat 3468628  T
Q  440 gaaaatcgcttata 453  Q
    |||||  |||||||    
T  3468627 gaaaaaagcttata 3468614  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 447 - 528
Target Start/End: Original strand, 3610811 - 3610894
Alignment:
Q  447 gcttataggaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagtgtttat 528  Q
    |||||||  |||||||| || ||||||||||||||  | | || |||||||||||||||||||| || ||||| ||||||||||    
T  3610811 gcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagcacttatatgacaagtgtttat 3610894  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 399 - 520
Target Start/End: Original strand, 26935573 - 26935696
Alignment:
Q  399 tgttttcagcttatttccgtatgttgtctagaaaagcttatgaaaatcgcttataggaaaacagtatgacttcattttatc--ttgctataaaaatagct 496  Q
    |||||||||||||||||| || | | | ||||| || |||||||||| ||| ||| ||||||| | | || | ||||||||  ||| |||||||||||||    
T  26935573 tgttttcagcttatttccataagctctttagaatagattatgaaaatagctcatatgaaaacaatttaaccttattttatcatttgttataaaaatagct 26935672  T
Q  497 tatacataagcaattttatgataa 520  Q
    || ||| ||||| || ||||||||    
T  26935673 tacacaaaagcacttatatgataa 26935696  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 484 - 562
Target Start/End: Original strand, 22388014 - 22388093
Alignment:
Q  484 tataaaaatagcttatacataagcaattttatgataagtgtttatcttgtaagc-tttaattaggttatttatccaaact 562  Q
    |||| ||||||||||| |||||||| ||  ||||||||||||||| || |||||  ||||||| ||| ||||||||||||    
T  22388014 tatagaaatagcttatccataagcacttaaatgataagtgtttatgttataagcgcttaattaagttgtttatccaaact 22388093  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 44207750 - 44207697
Alignment:
Q  465 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgat 518  Q
    |||||| ||||||||||||||||||||||||||| | ||||||| || ||||||    
T  44207750 tgactttattttatcttgctataaaaatagcttacatataagcacttgtatgat 44207697  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 389
Target Start/End: Complemental strand, 15581367 - 15581316
Alignment:
Q  338 agcacttgtgagactgtttcgaagagttaatggaaacaaccaatgacatgtc 389  Q
    ||||||||||||| ||||| |||||| |||||||||||||  ||||||||||    
T  15581367 agcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtc 15581316  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 433 - 506
Target Start/End: Original strand, 21335 - 21410
Alignment:
Q  433 agcttatgaaaatcgcttataggaaaacagtatgacttcattttatcttg--ctataaaaatagcttatacataag 506  Q
    ||||||||||||  ||||||| ||||||| | | |||| ||||||||||   ||||||||||||||||||||||||    
T  21335 agcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T

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Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 465 - 519
Target Start/End: Original strand, 32920489 - 32920543
Alignment:
Q  465 tgacttcattttatcttgctataaaaatagcttatacataagcaattttatgata 519  Q
    |||||| ||||||||||| |||||||||||||||| ||||| || || |||||||    
T  32920489 tgactttattttatcttgttataaaaatagcttatccataaacacttatatgata 32920543  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 455 - 522
Target Start/End: Complemental strand, 47970309 - 47970240
Alignment:
Q  455 gaaaacagtatgacttcattttatctt--gctataaaaatagcttatacataagcaattttatgataagt 522  Q
    ||||| ||| |||||||||||||||||  | |||| |||||||||||||||||||| || ||||| ||||    
T  47970309 gaaaatagtttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatgacaagt 47970240  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 435 - 505
Target Start/End: Original strand, 55437345 - 55437415
Alignment:
Q  435 cttatgaaaatcgcttataggaaaacagtatgacttcattttatcttgctataaaaatagcttatacataa 505  Q
    ||||||||||| ||||||| ||||| | | |||||| ||||||| ||| |||| |||||||||||| ||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataa 55437415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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