View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_low_10 (Length: 316)
Name: NF11757_low_10
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27261189 - 27261384
Alignment:
| Q |
1 |
aaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcacttttgtactatgggcac |
100 |
Q |
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| T |
27261189 |
aaccgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttaaaaaatgattgtccaattcctctcacttttgtactatgggcac |
27261288 |
T |
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| Q |
101 |
cacattatcgagataatgcacatcccgaagattatagatgtatccatatgatgattgtttataatgaactcagtcggatggcatttaatgaaataa |
196 |
Q |
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| T |
27261289 |
cacattatcgagataatgtacatcctgaagattatagatgtatccatatgatgattgtttataatgaacttagtcgggtggcatttaatgaaataa |
27261384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 27265729 - 27265838
Alignment:
| Q |
188 |
atgaaataataggagatgatgacgtggtcattgtggaaacctttgattctcaagactatgttacggatgataagaaggttgaagatggagttaagattga |
287 |
Q |
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| T |
27265729 |
atgaaataataggagatgatgacgtggtcattgtggaaacctttgattctcaagactatgttagtgatgataagaaggttgaagatggagttaagattga |
27265828 |
T |
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| Q |
288 |
agttgatagc |
297 |
Q |
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| T |
27265829 |
agttgatagc |
27265838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 21941401 - 21941471
Alignment:
| Q |
15 |
tctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcactt |
85 |
Q |
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| T |
21941401 |
tctaacacatgtgaatgaaaattattttatgatggtatatttgaagaatggttgtccaattcctctgactt |
21941471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 35479106 - 35479064
Alignment:
| Q |
255 |
tgataagaaggttgaagatggagttaagattgaagttgatagc |
297 |
Q |
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| T |
35479106 |
tgataagaaggctgaagatggagtcaagattcaagttgatagc |
35479064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 13750714 - 13750751
Alignment:
| Q |
255 |
tgataagaaggttgaagatggagttaagattgaagttg |
292 |
Q |
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| T |
13750714 |
tgataagaaggttgaagatggaatcaagattgaagttg |
13750751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 27546914 - 27546994
Alignment:
| Q |
4 |
cgaatcatgtatctaatacatgtgaatgaaaaacattttaagattttctatttgaaaaatgattgtccaattcctctcact |
84 |
Q |
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||||| |||| ||||| ||||||||||| || ||||||| ||| | |||||||| |||| |||||||||||||| |||| |
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| T |
27546914 |
cgaatgatgtgtctaactcatgtgaatgacaaccattttatgatggtgtatttgaagaatggttgtccaattcctcccact |
27546994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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