View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_low_14 (Length: 285)
Name: NF11757_low_14
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 37610323 - 37610056
Alignment:
| Q |
19 |
ctttcacataccctgctgcatatttgctagcaagtaaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtt |
118 |
Q |
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| T |
37610323 |
ctttcacataccctgctgcatatttgctagcaagtaaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtt |
37610224 |
T |
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| Q |
119 |
tggtgaccaatatgttaaaccagctaaccctacattgtgcattgctcttgcttccgtcgaaaccacctacacatattcgccataaaacaccatttgaaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37610223 |
tggtgaccaatatgttaaaccagctaaccctacattgtgcattgctcttgcttccgtcgaaaccacctacacatattcgccataaaacaccatttgaaag |
37610124 |
T |
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| Q |
219 |
ttaacaatacatgttatttacaccatta-----------atgataagagaaaccttacctttcctatg |
275 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37610123 |
ttaacaatacatgttatttacaccattaacatgcaggatatgataagagaaaccttacctttcctatg |
37610056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 1370158 - 1370325
Alignment:
| Q |
19 |
ctttcacataccctgctgcatatttgctagcaagtaaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtt |
118 |
Q |
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| T |
1370158 |
ctttcacatatcctgctgcatatttgctacttaacaaagggtcttcacctggtgtttcttgtccccttccccatcttggatctctgaatatgttaatgtt |
1370257 |
T |
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| Q |
119 |
tggtgaccaatatgttaaaccagctaaccctacattgtgcattgctcttgcttccgtcgaaaccacct |
186 |
Q |
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| T |
1370258 |
tggtgaccaatatgtcaaaccggccaaccctacattgtacattgctcttgcttcatttgaaaccacct |
1370325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 25887905 - 25887979
Alignment:
| Q |
54 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaa |
128 |
Q |
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| T |
25887905 |
aaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaa |
25887979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 25928351 - 25928425
Alignment:
| Q |
54 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaa |
128 |
Q |
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| T |
25928351 |
aaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaa |
25928425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 25957270 - 25957191
Alignment:
| Q |
54 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaatatgt |
133 |
Q |
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| T |
25957270 |
aaaggatcttcaccagctgtctcttgccctcttccccatcttgggtccctaaatatgtttatgtttggtgcccaaaatgt |
25957191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 25910512 - 25910586
Alignment:
| Q |
54 |
aaagggtcttctcctggtgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaa |
128 |
Q |
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||||| ||||| || | ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| |||| |
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| T |
25910512 |
aaaggatcttcaccagctgtttcttgtcctcttccccatcttgggtccctgaatatgtttatgtttggtgcccaa |
25910586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 33423663 - 33423725
Alignment:
| Q |
71 |
tgtttcttgacctcttccccatcttggatccctaaatatgttaatgtttggtgaccaatatgt |
133 |
Q |
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||||||||| ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||| |
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| T |
33423663 |
tgtttcttgtcctctcccccatcttggatccctgaatatgtttatgtttggtgcccaaaatgt |
33423725 |
T |
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