View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_low_16 (Length: 255)
Name: NF11757_low_16
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 42309342 - 42309572
Alignment:
| Q |
17 |
aaaaccaatgcaccaaacaacatgcttgaccttaaccttggatcaggttcaagtcaaaatgcttcaaattccagcaattagagataagaagtatcatcat |
116 |
Q |
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| T |
42309342 |
aaaaccaatgcaccaaacaacatgcttgaccttaaccttggatcaggttcaagtcaaaatgcttccaattccagcaattagagataagaagtatcatcat |
42309441 |
T |
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| Q |
117 |
caacatcatgtcatgacccaactaggagactttttattttgtgaaaaagccaaagttttcaatgtagtggtttcagggtactaatatttccatttacctt |
216 |
Q |
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| T |
42309442 |
caacatcat-----gacccaactaggagactttttattttgtgaaaaaaccaaagtgttcaatgtagtggtttcagggtactaatatttccatttacctt |
42309536 |
T |
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| Q |
217 |
cttttatctattttagatatgaatatgaatatgaat |
252 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
42309537 |
cttttatctattttagatatgaatatgaatatgaat |
42309572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 10284357 - 10284286
Alignment:
| Q |
47 |
cttaaccttggatcaggttcaagtcaaaatgcttcaaattccagcaattagagataagaagtatcatcatca |
118 |
Q |
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|||| |||||| |||||||||||||||||| ||||||||| || |||||| | ||| || | |||||||||| |
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| T |
10284357 |
cttagccttggttcaggttcaagtcaaaatccttcaaatttcaacaattacatatatgaggcatcatcatca |
10284286 |
T |
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