View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_low_2 (Length: 653)
Name: NF11757_low_2
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_low_2 |
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| [»] scaffold0164 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 43558390 - 43558058
Alignment:
| Q |
14 |
tggacatcatgtcattggaacagttagagatttaggtaaaatgtattttatgatcatgaccaaatgtattttcacttttcacatttaacatatacttgca |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43558390 |
tggatatcatgtcattggaacagttagagatttaggtaaaatgtattttatgatcatgaccaaatgtattttcacttttcacatttaacatatacttgca |
43558291 |
T |
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| Q |
114 |
ggtaagaagcagaaagttgaacatttatggaagttggaaggagcaacagaaagactcaaactagtccaagctgatttaatggaagaaaatagcttcgaca |
213 |
Q |
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| T |
43558290 |
ggtaagaagcagaaagttgaacatttatggaagttggaaggagcaacagaaagactcaaactagtccaagctgatttaatggaagaaaatagcttcgaca |
43558191 |
T |
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| Q |
214 |
atgcgatcatgggatgcaaaggtgtctttcacattgcctctccagtactcaatcatatatcaaatgatcctaaggtttgatatttcatttatatta---- |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43558190 |
atgcgatcatgggatgcaaaggtgtctttcacattgcctctccagtactcaatcatatatcaaatgatcctaaggtttgatatttcatttatattaatta |
43558091 |
T |
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| Q |
310 |
attattcataggtatctctatgtcacaacctat |
342 |
Q |
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| T |
43558090 |
attattcatagatatctctatgtcacaacctat |
43558058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 408 - 634
Target Start/End: Complemental strand, 43558045 - 43557819
Alignment:
| Q |
408 |
ataatctcaaacaacaggcagaaatcttggaaccagcggtccaaggtacgctgaatgttttgcgttcttgtcaaaagaatccagcccttgttcgagtggt |
507 |
Q |
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| T |
43558045 |
ataatctcaaacaacaggcagaaatcttggaaccagcagtccaaggtacgctgaatgttttgcgttcttgtcgaaagaatccagcccttgttcgagtggt |
43557946 |
T |
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| Q |
508 |
gttagcctcatcgtcttcagctgttagagtaagagctgatttcgatccaaacataccaatagacgagtcatcttggagctcattggaattgtgtgagaaa |
607 |
Q |
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| T |
43557945 |
gttagcctcatcgtcttcagctgttagagtaagagctgatttcgatccaaacataccaatagacgagtcatcttggagctcattggaattgtgtgagaaa |
43557846 |
T |
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| Q |
608 |
ctccaggtacacatttccttaagtaat |
634 |
Q |
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| T |
43557845 |
ctccaggtacacatttccttaagtaat |
43557819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 103 - 406
Target Start/End: Complemental strand, 23751 - 23458
Alignment:
| Q |
103 |
atatacttgcaggtaagaagcagaaagttgaacatttatggaagttggaaggagcaacagaaagactcaaactagtccaagctgatttaatggaagaaaa |
202 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
23751 |
atatacttgcaggtaagaagcataaagttgaacatttatggaagttggagggaccaacagaaagactcgaactagtccaagctgatttaatggaacaaaa |
23652 |
T |
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| Q |
203 |
tagcttcgacaatgcgatcatgggatgcaaaggtgtctttcacattgcctctccagtactcaatcatatatcaaatgatcctaaggtttgatatttcatt |
302 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
23651 |
tagcttcgacaaagcgatcatgggatgcaaagctgtctttcacattgcctctccagtacccaatcatatatcaaatggtcctaaggtgtgatatttcatt |
23552 |
T |
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| Q |
303 |
tatattaattattcataggtatctctatgtcacaacctataagcttgcttatacattaatcaaaatcttcacatcatggagactatacacatagtgaaat |
402 |
Q |
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| T |
23551 |
tatatta----ttcataggtatctctatgtcacaacctataagctc----atgcattaattaaaatcctcacatcatggagactat--acatagtgaaat |
23462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 421 - 634
Target Start/End: Complemental strand, 23407 - 23200
Alignment:
| Q |
421 |
acaggcagaaatcttggaaccagcggtccaaggtacgctgaatgttttgcgttcttgtcaaaagaatccagcccttgttcgagtggtgttagcctcatcg |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| | || |
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| T |
23407 |
acaggcagaaatcttggaaccagcggtccaaggtacgctaaatgtgttgcgttcttgtcgaaagaatccagcccttgttcgagttgtgttagccgcgtca |
23308 |
T |
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| Q |
521 |
tcttcagctgttagagtaagagctgatttcgatccaaacataccaatagacgagtcatcttggagctcattggaattgtgtgagaaactccaggtacaca |
620 |
Q |
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| T |
23307 |
tcttcagctgttagagtaagagcagatttcgatccaaacataccaatagacgagtcatcttggagctcataggaattgtgtga------ccaggtacaca |
23214 |
T |
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| Q |
621 |
tttccttaagtaat |
634 |
Q |
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|||||| ||||||| |
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| T |
23213 |
tttcctcaagtaat |
23200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 23850 - 23807
Alignment:
| Q |
14 |
tggacatcatgtcattggaacagttagagatttaggtaaaatgt |
57 |
Q |
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|||| ||||||||||||||||| ||||| ||||||||||||||| |
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| T |
23850 |
tggatatcatgtcattggaacaattagacatttaggtaaaatgt |
23807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 475 - 635
Target Start/End: Original strand, 36517059 - 36517219
Alignment:
| Q |
475 |
ttgtcaaaagaatccagcccttgttcgagtggtgttagcctcatcgtcttcagctgttagagtaagagctgatttcgatccaaacataccaatagacgag |
574 |
Q |
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|||| ||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36517059 |
ttgttaaaagaatccagcccttgttcgagttgtgttagcctcgtcatcttcatctgttagagtaagagctgatttcgatccaaacataccaatagacgag |
36517158 |
T |
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| Q |
575 |
tcatcttggagctcattggaattgtgtgagaaactccaggtacacatttccttaagtaatc |
635 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36517159 |
tcatcttggagcacattggaattgtgtgagaaactccaggtacacatttccttaagtaatc |
36517219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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