View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11757_low_4 (Length: 470)

Name: NF11757_low_4
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11757_low_4
NF11757_low_4
[»] chr6 (8 HSPs)
chr6 (226-455)||(31565454-31565683)
chr6 (25-184)||(31565292-31565451)
chr6 (223-334)||(33413910-33414021)
chr6 (77-233)||(33414090-33414254)
chr6 (223-305)||(33351038-33351120)
chr6 (65-203)||(33351212-33351363)
chr6 (358-408)||(33413817-33413867)
chr6 (26-61)||(33414293-33414328)
[»] chr2 (3 HSPs)
chr2 (79-155)||(17445951-17446026)
chr2 (223-297)||(17446159-17446233)
chr2 (345-409)||(17446284-17446348)


Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 226 - 455
Target Start/End: Original strand, 31565454 - 31565683
Alignment:
Q  226 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctttga 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31565454 tctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagccactctttga 31565553  T
Q  326 ttacagtatacaaatattgtgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacatgagt 425  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565554 ttacagtatacaaatattgtgaaatttactctataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagttgctcggtaacatgagt 31565653  T
Q  426 tttgcttccgtgttcatagagcttgattgt 455  Q
    ||||||||||||||||||||||||||||||    
T  31565654 tttgcttccgtgttcatagagcttgattgt 31565683  T

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Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 31565292 - 31565451
Alignment:
Q  25 tgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatttgttgcattttcataggaagaagtatacaa 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565292 tgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatttgttgcattttcataggaagaagtatacaa 31565391  T
Q  125 cagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565392 cagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 31565451  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 33414021 - 33413910
Alignment:
Q  223 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctattcaaggatagacactctt 322  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| ||  | ||||| |||||||    
T  33414021 aggtttgaattgtttgtttcattaattcttgacatttgttacttatcatgtaaatgataataatcattaatcattgatctgtttgaagataggcactctt 33413922  T
Q  323 tgattacagtat 334  Q
    || ||| |||||    
T  33413921 tgcttatagtat 33413910  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 33414254 - 33414090
Alignment:
Q  77 gttttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaa---------tcataataaccaaa 167  Q
    |||||||||| ||||| | ||||||||||||||||||||||||| |  |||||||||| |||||||| |||||||||         ||||||||||||||    
T  33414254 gttttcaagagaagtaatcgttgcattttcataggaagaagtatgcggcagagtgagaccaattttg-aaacagaaatctgcttcttcataataaccaaa 33414156  T
Q  168 tgttgattagacgccaatacattttactgatatgtatctctatcgaggatagatgaggtctgaatt 233  Q
    |||||||||| |||  | || |||||||||| ||||||| ||| ||||||| |||||| |||||||    
T  33414155 tgttgattaggcgcggacacgttttactgatctgtatctgtattgaggatacatgaggactgaatt 33414090  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 33351120 - 33351038
Alignment:
Q  223 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcattgatctatt 305  Q
    |||| ||||||||||||||||||||||||| |||||||||||| ||  |||||| |||||||||||| |||||||||||||||    
T  33351120 aggtttgaattgtttgtttcattaattcttgacatttgttactactattgtaaaggataataatcattaatcattgatctatt 33351038  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 65 - 203
Target Start/End: Complemental strand, 33351363 - 33351212
Alignment:
Q  65 atagcttaaaaagttttcaagaaaagtatttgt---tgcattttcataggaagaagtatacaacagagtgagatcaa-ttttgaaaacagaaa------- 153  Q
    |||||||| || | |||||||| ||||||||||   ||||||||||||||||||||||| |  | |||||||||||| |||||||||||||||           
T  33351363 atagcttacaacgctttcaagacaagtatttgtctttgcattttcataggaagaagtatgctgcggagtgagatcaatttttgaaaacagaaatcttgtt 33351264  T
Q  154 --tcataataaccaaatgttgattagacgccaatacattttactgatatgta 203  Q
      |||||||||||||||||||||||| |||  | ||||||||||||| ||||    
T  33351263 cttcataataaccaaatgttgattaggcgcggacacattttactgatctgta 33351212  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 33413867 - 33413817
Alignment:
Q  358 ataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagt 408  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||||||||||    
T  33413867 ataagttatgcgtatatctaagaagtggaagcttaaagggagcgataaagt 33413817  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 33414328 - 33414293
Alignment:
Q  26 gtgcggcgttttgttcggttcactcttggagaaaca 61  Q
    |||||||||||||||||||||||||| |||||||||    
T  33414328 gtgcggcgttttgttcggttcactctcggagaaaca 33414293  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 17445951 - 17446026
Alignment:
Q  79 tttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatc 155  Q
    |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  17445951 tttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttg-aaacagaaatc 17446026  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 17446159 - 17446233
Alignment:
Q  223 aggtctgaattgtttgtttcattaattcttaacatttgttacttctcatgtaaatgataataatcatcaatcatt 297  Q
    |||| |||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||| |||||||    
T  17446159 aggtttgaattgtttgtttgattaactcttgatatttgttacttctcatgtaaatgataataatcattaatcatt 17446233  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 409
Target Start/End: Original strand, 17446284 - 17446348
Alignment:
Q  345 tgaaatttactttataagttatgcatatatctaaaaagtgaaagcttaaaggaagcgataaagtt 409  Q
    |||||||| || |||||||||||| |||||||   ||||| ||||||||||||||| ||||||||    
T  17446284 tgaaatttgctctataagttatgcgtatatctgggaagtggaagcttaaaggaagcaataaagtt 17446348  T

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