View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11757_low_6 (Length: 457)
Name: NF11757_low_6
Description: NF11757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11757_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 10995120 - 10994695
Alignment:
| Q |
17 |
cagagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaagaagaagaatag |
116 |
Q |
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| T |
10995120 |
cagagactcggtacagcgagacacccccataaaactgcttgtatcaagttgctgatgaagataaaatcctacttgcatagagctaaaagaagaagaatag |
10995021 |
T |
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| Q |
117 |
tcttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctgaagagtgcatga |
216 |
Q |
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| T |
10995020 |
tcttctttttatagaggagcgctacaaattgcattcacaattagtagttggaaatgtattcattttagataagccaaaattaattctgaagagtgcatga |
10994921 |
T |
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| Q |
217 |
gtgacatagaatactataactttataccttaaatgttgcaacagctttggtgacattcttggtcccttaatattttgtttcaataaccttttgagcattt |
316 |
Q |
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| T |
10994920 |
gtgacatagaatactataactttataccttaaatgttgcaacagctttggtgacattcttggtcccttaatattttgtttcaataaccttttgagcattt |
10994821 |
T |
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| Q |
317 |
tcaacagaattatcagaccaaaagattgaaagtaaaaccatcattatttaaagtaacttctaaaataaagaaatgtgttaagccacgatctacattctta |
416 |
Q |
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| T |
10994820 |
tcaacagaattatcagaccaaaagattgaaagtaaaaccatcattatttaaagtaacttctaaaataaagaaatgtgttaagccacgatctacattctta |
10994721 |
T |
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| Q |
417 |
tttgcactagactggcatggagaaga |
442 |
Q |
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| T |
10994720 |
tttgcactagactggcatggagaaga |
10994695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 142 - 288
Target Start/End: Complemental strand, 10999213 - 10999068
Alignment:
| Q |
142 |
aaattgcattcacaattagtagttggaaatgtattcattttagataagccgaaattaattctgaagagtgcatgagtgacatagaatactataactttat |
241 |
Q |
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| T |
10999213 |
aaattgcattcacactcagtagttggaaatgtattcattttagata-gccgaaattaattctttcgagtgcatgaatgacatagaatactataactttat |
10999115 |
T |
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| Q |
242 |
accttaaatgttgcaacagctttggtgacattcttggtcccttaata |
288 |
Q |
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| T |
10999114 |
accttaaatgaaggaacaacttcaataacattattggtcccttaata |
10999068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 10999066 - 10998978
Alignment:
| Q |
324 |
aattatcagaccaaaagattgaaagtaaaaccatcattatttaaagtaacttctaaaataaagaaatgtgttaagccacgatctacatt |
412 |
Q |
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| T |
10999066 |
aattataagatcaaaagattgaaattaacaccagcattgtttagggtaacttttaaaataaagaaatgtgttaaaccacaatctacatt |
10998978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 10898803 - 10898752
Alignment:
| Q |
284 |
taatattttgtttcaataaccttttgagcattttcaacagaattatcagacc |
335 |
Q |
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| T |
10898803 |
taataatttgtttcaataaccttgcgagcattttcaacagagttatcagacc |
10898752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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