View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11758_high_12 (Length: 581)
Name: NF11758_high_12
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 5287184 - 5287715
Alignment:
| Q |
1 |
ggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
5287184 |
ggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgtaaataacttatgagaa |
5287280 |
T |
|
| Q |
101 |
ttgagttttgttg-atgtatt-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcattaatattttattaattaatg |
197 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||||| | | |||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5287281 |
ttgagttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaatattttattaattaatg |
5287380 |
T |
|
| Q |
198 |
aaccattctttaacaactactacatgtatacttgatctccaaaccaaagtcaagaccatatttaattgcattaccgtgttcacttgacattgaatttaca |
297 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287381 |
aaccattctttaacaacta---catgtatacttgatctccaaaccgaagtcaagaccatatttaattgcattaccgtgttcacttgacattgaatttaca |
5287477 |
T |
|
| Q |
298 |
acctattctcgtaatggtaatttataattgaaaatgttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatgat |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5287478 |
acctattctcgtaatggtaatttataattgaaaatgttttgggccgaatgaaattaagataagtttagaccaacacagtgtggcacaagtggtatatgat |
5287577 |
T |
|
| Q |
398 |
tgggttatttaaccattttattcagggtttgatcttcggctaacgcatagagtaaaatatatgttgggtgatatcaatcccttgattgaattttaattat |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
5287578 |
tgggttatttaaccattttattcagggtttgatcttcgactagcgcatagagtaaaatatatgttgggtgagatcaattccttgattgaattttaatttt |
5287677 |
T |
|
| Q |
498 |
ctcgaatgattaatctttgacttatgcgttgggggtac |
535 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
5287678 |
ctcgaatgattaatctttgacttatgcattggcggtac |
5287715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 5279176 - 5279589
Alignment:
| Q |
1 |
ggatgccaaagccaaaatgctaacaaggaagtatataatcttcatttt-gcaactcagtattactctttaatattcttcttatgtagataacttttgaga |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
5279176 |
ggatgccaaagccaagatgctaacaaggaagtatataatcttcatttttgtaactcagtactactctttaatattcttcttatgtaaataacttgtgaga |
5279275 |
T |
|
| Q |
100 |
--attgagttttgttg-atgtattgcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcattaatatttt--------- |
186 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||| |||||| | |||| |
|
|
| T |
5279276 |
gaattgagttttgttgcatgtattgcttgctatttataacaatgaaacattgaagtggtttgcatttgatatttaccgtcattagttttttttttttttt |
5279375 |
T |
|
| Q |
187 |
-------attaattaatgaaccattctttaacaactactacatgtatacttgatctccaaaccaaagtcaagaccatatttaattgcattaccgtgttca |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || |
|
|
| T |
5279376 |
ttttcatattaaataatgaaccattctttaacaacta---catgtatacttgatctccaaaccaaagtcaagaccatttttaattgcatggccgtgtcca |
5279472 |
T |
|
| Q |
280 |
cttgacattgaatttacaacctattctcgtaatggtaa-tttataattgaaaatgttttgggcttaatgaaattaagataagtttagaccaacac--agt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
5279473 |
cttgacattgaatttacaacctattctcgtaatggtaattttataa-tgaaaatattttgggcaaaatgaaattaagataagtttagaccaacactgtgt |
5279571 |
T |
|
| Q |
377 |
gtggcacaaatggtatat |
394 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
5279572 |
gtggcataaatggtatat |
5279589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 5281911 - 5281650
Alignment:
| Q |
1 |
ggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaa |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5281911 |
ggatgccaaagccaagatgctaactaggaggtataaaatcttcattttgcaactcagtactaccctttaatattcttcttatgtaaataacttttgagaa |
5281812 |
T |
|
| Q |
101 |
ttgagttttgttg-atgtattgcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccatcattaatattttattaattaatg |
197 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| | |||| ||||| || |||||||||||| ||||| |||||| | ||||||||| ||||| |
|
|
| T |
5281811 |
ttgagttttgttgcatatattgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttactgtcattagttttttattaaataatg |
5281712 |
T |
|
| Q |
198 |
aaccattctttaacaactactacatgtatacttgatctccaaaccaaagtcaagaccatatttaa |
262 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5281711 |
aaccattctttaaca---actacatgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
5281650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 520
Target Start/End: Complemental strand, 5281603 - 5281417
Alignment:
| Q |
334 |
ttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatgattgggttatttaaccattttattcagggtttgatctt |
433 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||| | | || ||||| |||||||| || | ||||||||| ||| || |||||| |||||| |
|
|
| T |
5281603 |
ttttgggctaaatgaaatgaagttaagtttagaccaacataatatgacacaagtggtatatatttcgaacatttaaccaatttgtttagggttcgatctt |
5281504 |
T |
|
| Q |
434 |
cggctaacgcatagagtaaaatatatgttgggtgatatcaatcccttgattgaattttaattatctcgaatgattaatctttgactt |
520 |
Q |
| |
|
|||| | ||||| | |||||||| ||| | || |||||| ||| | ||||||| |||||||| | ||||||||||| |||||| |
|
|
| T |
5281503 |
cggccgatgcatatggcaaaatatacgttaagagaggtcaatctcttaaatgaatttcaattatcttggatgattaatctctgactt |
5281417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 20358577 - 20359110
Alignment:
| Q |
1 |
ggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
20358577 |
ggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagta---ctctttaatattcttcttatgtaaataacttatgagaa |
20358673 |
T |
|
| Q |
101 |
ttgagttttgttg-atgtatt-gcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcattaatattttattaattaatg |
197 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||||| | | |||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20358674 |
ttgagttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaatattttattaattaatg |
20358773 |
T |
|
| Q |
198 |
aaccattctttaacaactactacatgtatacttgatctcc--aaaccaaagtcaagaccatatttaattgcattaccgtgttcacttgacattgaattta |
295 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20358774 |
aaccattctttaacaactac---atgtatacttgatctccccaaaccaaagtcaagaccatatttaattgcattaccgtgttcacttgacattgaattta |
20358870 |
T |
|
| Q |
296 |
caacctattctcgtaatggtaatttataattgaaaatgttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatg |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20358871 |
caacctattctcgtaatggtaatttataatttaaaatgttttgggctgaatgaaattaagataagtttagaccaacacagtgtggcacaagtggtatatg |
20358970 |
T |
|
| Q |
396 |
attgggttatttaaccattttattcagggtttgatcttcggctaacgcatagagtaaaatatatgttgggtgatatcaatcccttgattgaattttaatt |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
20358971 |
attgggttatttaaccattttattcagggtttgatcttcggctagcacatagagtaaaatatatgctgggtgagatcaattccttgattgaattttaatt |
20359070 |
T |
|
| Q |
496 |
atctcgaatgattaatctttgacttatgcgttgggggtac |
535 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
20359071 |
ttctcgaatgattagtcgttgacttatgcattgggggtac |
20359110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 20353308 - 20353048
Alignment:
| Q |
1 |
ggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagat-aacttttgaga |
99 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
20353308 |
ggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcag---cactctttaatattcttcttatgtaaataaacttgtgaga |
20353212 |
T |
|
| Q |
100 |
attgagttttgttg-atgta-ttgcttgctatttataagcacgaaa-attgaagt-ggtttgcatttgatctttaccatcattaatattttattaattaa |
195 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| | |||| ||||| || |||||||||||| |||||| |||||| | ||||||||| ||| |
|
|
| T |
20353211 |
attgagttttgttgcatgtatttgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttaccgtcattagttttttattaaataa |
20353112 |
T |
|
| Q |
196 |
tgaaccattctttaacaactactacatgtatacttgatctccaaaccaaagtcaagaccatatttaa |
262 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20353111 |
tgaaccattctttaaca---actacatgtttgcttgatctccaaaccaaagtcaagaccatttttaa |
20353048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 20353001 - 20352940
Alignment:
| Q |
334 |
ttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatg |
395 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| | || | ||| ||||||||| |
|
|
| T |
20353001 |
ttttgggctaaatgaaattaagttaagtttagaccaacacaatatgactcaagtggtatatg |
20352940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 9e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 6236163 - 6236423
Alignment:
| Q |
1 |
ggatgccaaagccaaaatgctaacaaggaagtatataatcttcattttgcaactcagtattactctttaatattcttcttatgtagataacttttgagaa |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
6236163 |
ggatgccaaagccaagatgctaacaaggaagtatagaatcttcattttgcaactcagtactactctttaatattcttcttatgtaaataaccggtgagaa |
6236262 |
T |
|
| Q |
101 |
ttgagttttgttg-atgtattgcttgctatttataagcacgaaa-attgaagtggtttgcatttgatctttaccatcattaatattttattaattaatga |
198 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||| |||||| | ||||||||| |||||| |
|
|
| T |
6236263 |
ttgagttttgttgcatgtattgcttgctatttataagaatgaaacattgaagtggtttgcatttgatatttaccgtcattagttttttattaaataatga |
6236362 |
T |
|
| Q |
199 |
accattctttaacaactactacatgtatacttgatctccaaaccaaagtcaagaccatatttaa |
262 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
6236363 |
accattctttaaca---actacatgtgtacttgatctccatactaaagtcaaaaccatttttaa |
6236423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 330 - 433
Target Start/End: Original strand, 6236466 - 6236569
Alignment:
| Q |
330 |
aatgttttgggcttaatgaaattaagataagtttagaccaacacagtgtggcacaaatggtatatgattgggttatttaaccattttattcagggtttga |
429 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||| ||| ||||| ||||||||| || | | ||||||||| ||| || |||||| || |
|
|
| T |
6236466 |
aatgttttggactaaatgaaattaagataagtttagaccaacacgatgtcacacaagtggtatatgtttcgatcatttaaccaatttgtttagggttcga |
6236565 |
T |
|
| Q |
430 |
tctt |
433 |
Q |
| |
|
|||| |
|
|
| T |
6236566 |
tctt |
6236569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University