View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_high_15 (Length: 528)

Name: NF11758_high_15
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_high_15
NF11758_high_15
[»] chr7 (2 HSPs)
chr7 (19-524)||(12175511-12176012)
chr7 (19-450)||(12164055-12164487)
[»] chr8 (1 HSPs)
chr8 (56-466)||(36667890-36668302)
[»] chr4 (1 HSPs)
chr4 (19-401)||(3321525-3321907)
[»] chr1 (8 HSPs)
chr1 (128-296)||(13065300-13065468)
chr1 (141-297)||(13100937-13101092)
chr1 (141-297)||(13007136-13007292)
chr1 (141-297)||(13070276-13070432)
chr1 (141-300)||(13244621-13244780)
chr1 (141-301)||(12963975-12964135)
chr1 (141-297)||(13094335-13094491)
chr1 (141-297)||(13204395-13204551)
[»] chr6 (5 HSPs)
chr6 (146-264)||(337821-337939)
chr6 (146-264)||(341859-341977)
chr6 (143-270)||(377572-377699)
chr6 (143-270)||(346803-346930)
chr6 (143-270)||(355462-355589)
[»] chr5 (1 HSPs)
chr5 (141-189)||(29669306-29669354)


Alignment Details
Target: chr7 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 524
Target Start/End: Complemental strand, 12176012 - 12175511
Alignment:
Q  19 ttatcctccggttcctttagagcataaatcagcattaaaatctgatgtgcttcctagtgggcatagggttaaaccaaatacaatgatagtgtattctcta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12176012 ttatcctccggttcctttagagcataaatcagcattaaaatctgatgtgcttcctagtgggcatagggttaaaccaaatacaatgatagtgtattctcta 12175913  T
Q  119 tactcggtcggaagggtcgaggaaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12175912 tactcggtcggaagggtcgaggaaatatggggagaagattgtttgaaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccct 12175813  T
Q  219 cttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgctatagcaatattgttaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12175812 cttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgctatagcaatattgttgaa 12175713  T
Q  319 ttatcacattcaagtggtggaagatcatcccataatcccaagtgtttctgttgttttacacatgaaacatggcttgaaggttaatgtcnnnnnnngaagc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  12175712 ttatcacattcaagtggtggaagatcatcccataatcccaagtctttctgttgttttacacatgaaacatggcttgaaggttaatgtcaaaaaaagaagc 12175613  T
Q  419 atttaatgatcaagtgagatcttttcaaaataactgaactatgttcggataataatatgtgtaatgtttatttatatatttgaatgctcaaataaacacc 518  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  12175612 atttaatgatcaagagagatcttttcaaaataactgaactatgttcgg---ataatatgtgtaat-tttatttatatatttgaattctcaaataaacacc 12175517  T
Q  519 atgtgt 524  Q
    ||||||    
T  12175516 atgtgt 12175511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 12164487 - 12164055
Alignment:
Q  19 ttatcctccggttcctttagagcataaatcagcattaaaatctgatgtgcttcctagtgggcatagggttaaaccaaatacaatgatagtgtattctcta 118  Q
    |||||| ||| | ||||| ||||||||||| |||   ||||||||||||||||||||||| ||||||||| |  ||||||||||||||||||||||||||    
T  12164487 ttatccgccgataccttttgagcataaatctgcacagaaatctgatgtgcttcctagtggacatagggttgagtcaaatacaatgatagtgtattctcta 12164388  T
Q  119 tactcggtcggaagggtcgaggaaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccct 218  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||| || ||||||| |    
T  12164387 tactccgtcggaagggtcgaggaaatatggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttcctt 12164288  T
Q  219 cttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgctatagcaatattgttaaa 318  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12164287 cttacaagttcattgcttttaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgctatagcaatattgttgaa 12164188  T
Q  319 ttatcacattcaagtggtggaagatcatcccataatcccaagtgtttctgttgttttacacatgaaacatggcttgaaggttaatgtcnnnnnnngaagc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||       |||||    
T  12164187 ttatcacattcaagtggtggaagatcatcccataatcccaagtctttctgttgtcttacacatgaaacatggcttgaaggttaatctcaaaaaaagaagc 12164088  T
Q  419 atttaatgatca-agtgagatcttttcaaaata 450  Q
    ||||| |||| | || |||||||||||||||||    
T  12164087 atttagtgataagagagagatcttttcaaaata 12164055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 56 - 466
Target Start/End: Complemental strand, 36668302 - 36667890
Alignment:
Q  56 aaatctgatgtgcttcctagtgggcatagggttaaaccaaatacaatgatagtgtattctctatactcggtcggaagggtcgaggaaatatggggagaag 155  Q
    ||||||||||||||||||||||| |||  | ||||  |||||||||||||| ||||||||||||||||  | |||||||| |||||||||||||||||||    
T  36668302 aaatctgatgtgcttcctagtggtcatgtgattaagtcaaatacaatgatattgtattctctatactcaattggaagggtggaggaaatatggggagaag 36668203  T
Q  156 attgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggag 255  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  36668202 attgcttggaatttaaaccagagaggtgggtttctaagaaaggagggacaattcatgtaccttcttacaagttcattgctttcaatgctggaccaaggag 36668103  T
Q  256 ttgtttgggtaaggatataagcttcattgagatgaaaatggttgctatagcaatattgttaaattatcacattcaagtggtggaagatcatcccataatc 355  Q
    | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||||  |||||||| |||    
T  36668102 tcgtttgggtaaggatataagcttcattgagttgaagatggttgctatagcaatattgttgaactatcacattcaagtggtggaaggccatcccattatc 36668003  T
Q  356 ccaagtgtttctgttgttttacacatgaaacatggcttgaaggttaatgtcnnnnnnngaagcatttaatgatcaag--tgagatcttttcaaaataact 453  Q
    |||||| ||||||| || ||||| ||||| |||||||||||| ||||||||       ||||| ||| |||||||||    | || |||| |||||||||    
T  36668002 ccaagtctttctgtcgtcttacatatgaagcatggcttgaagattaatgtcaaaaaaagaagcttttgatgatcaagccatatatattttgaaaataact 36667903  T
Q  454 gaactatgttcgg 466  Q
    |||||||||||||    
T  36667902 gaactatgttcgg 36667890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 3321525 - 3321907
Alignment:
Q  19 ttatcctccggttcctttagagcataaatcagcattaaaatctgatgtgcttcctagtgggcatagggttaaaccaaatacaatgatagtgtattctcta 118  Q
    |||||| || || ||||| |||||||||||  |||||||| | ||||| ||||||||||| |||| | ||||  ||||||||||||||||||||||||||    
T  3321525 ttatccacctgtcccttttgagcataaatcttcattaaaaccagatgtacttcctagtggacataagattaagtcaaatacaatgatagtgtattctcta 3321624  T
Q  119 tactcggtcggaagggtcgaggaaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccct 218  Q
    || ||  | ||||| || |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||| || |    
T  3321625 tattcaattggaagagttgaggaaatttggggagaagattgcttggagtttaaaccagagaggtggatttctaagaaaggagaaataattcatgtacctt 3321724  T
Q  219 cttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgctatagcaatattgttaaa 318  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| ||  | |||||||| |||| ||    
T  3321725 cttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagatgagtttcattgagatgaaaatgattattgtagcaatactgttgaa 3321824  T
Q  319 ttatcacattcaagtggtggaagatcatcccataatcccaagtgtttctgttgttttacacatgaaacatggcttgaaggtta 401  Q
    |||||| ||||| ||||| |||| |||     |||  |||||| ||||| |  |  |||||||||||||||||||||||||||    
T  3321825 ttatcatattcatgtggttgaaggtcaagtagtaaagccaagtatttctttaatcctacacatgaaacatggcttgaaggtta 3321907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 296
Target Start/End: Original strand, 13065300 - 13065468
Alignment:
Q  128 ggaagggtcgaggaaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagt 227  Q
    |||||| | ||| |||||||||||||||| ||  |||||||||| || ||||| ||||| || || |  |||   || || ||||| || ||||||||||    
T  13065300 ggaaggatggagaaaatatggggagaagactgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagt 13065399  T
Q  228 tcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 296  Q
    |||| ||||||||||| || ||||| |||||||||||||| ||||| | |||| |||| ||||| ||||    
T  13065400 tcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 13065468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 13101092 - 13100937
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaa 240  Q
    |||||||||||||||| ||  |||||||||| || ||||| ||| | ||  ||| ||||   || || ||||| || |||||||||||||| ||||||||    
T  13101092 aaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa 13100993  T
Q  241 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 297  Q
    | | ||||| || |||||| ||||||||||||| ||||||||| | ||||| |||||    
T  13100992 t-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggt 13100937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 13007292 - 13007136
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaa 240  Q
    |||||||||||||||| ||  |||||||||| || ||||| ||| | ||  ||| ||||   || || ||||| || |||||||||||||| ||||||||    
T  13007292 aaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa 13007193  T
Q  241 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 297  Q
    | | || || || |||||| |||| |||||||| ||||||||| | ||||| |||||    
T  13007192 tacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggt 13007136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 297
Target Start/End: Original strand, 13070276 - 13070432
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaa 240  Q
    |||||||||||||||| ||  |||||||||| || ||||| ||| | ||  ||| ||||   || || |||||||| |||||||||||||| ||||||||    
T  13070276 aaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaa 13070375  T
Q  241 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 297  Q
    | | || || || |||||||||||||| ||| | || |||||| | ||||| |||||    
T  13070376 tacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggt 13070432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 300
Target Start/End: Original strand, 13244621 - 13244780
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaa 240  Q
    ||||||||||||| ||||| ||||||||||| || || || ||||| ||    | ||||||||| ||  |||| || |||||||||||||| ||||||||    
T  13244621 aaatatggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaa 13244720  T
Q  241 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgc 300  Q
    ||| || || || |||||| | || || ||| | |||||| || | ||||||||||||||    
T  13244721 tgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgc 13244780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 301
Target Start/End: Original strand, 12963975 - 12964135
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaa 240  Q
    ||||||||||||||||||| ||||||||||| || || || ||||| || || | |||||  || || || || || ||||| |||||||| || |||||    
T  12963975 aaatatggggagaagattgcttggaatttaagcctgaaagatggatatcaaatagaggagaaattatacaagtgccatcttataagttcatagcattcaa 12964074  T
Q  241 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgct 301  Q
    ||| || || || |||||| | || || ||||| |||||  || | |||||||||||||||    
T  12964075 tgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatggttgct 12964135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 13094491 - 13094335
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaa 240  Q
    |||||||||||||||| ||  |||||||||| || ||||| ||||| ||| |||  ||||  || || ||||| || |||||||||||||| ||||||||    
T  13094491 aaatatggggagaagactgcatggaatttaagcctgagagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaa 13094392  T
Q  241 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 297  Q
      | ||||| || | |||| | ||||| ||||| || |||||| | ||||| |||||    
T  13094391 cacaggacccagaatttgtataggtaaagatattagtttcattcaaatgaagatggt 13094335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 297
Target Start/End: Complemental strand, 13204551 - 13204395
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaa 240  Q
    |||||||||||||||| ||  |||||||||| || ||||| ||| | ||  ||| ||||   || || ||||| || |||||||||||||| ||||||||    
T  13204551 aaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaa 13204452  T
Q  241 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 297  Q
    | | || || || |||||||||||||| ||| | || |||||| | ||||| |||||    
T  13204451 tacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggt 13204395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 337821 - 337939
Alignment:
Q  146 tggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctg 245  Q
    |||||||||||||| ||||| || || |||||||||||||||||| ||| |||||| ||  || |||  || |||||||| ||| ||  ||| |||||||    
T  337821 tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgtttatgcaccatcttacaaattctttagttttaatgctg 337920  T
Q  246 gaccaaggagttgtttggg 264  Q
    ||||||||| |||||||||    
T  337921 gaccaaggacttgtttggg 337939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 341859 - 341977
Alignment:
Q  146 tggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctg 245  Q
    |||||| ||||||| ||||| ||||| |||||||||||||||||| ||| |||||| ||  || |||  || |||||||||||| ||  ||| |||||||    
T  341859 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 341958  T
Q  246 gaccaaggagttgtttggg 264  Q
    |||| |||| |||||||||    
T  341959 gacctaggacttgtttggg 341977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 270
Target Start/End: Original strand, 377572 - 377699
Alignment:
Q  143 atatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatg 242  Q
    ||||||||||||||||| ||||| || || |||||||| ||||| ||| ||| |||  | ||  ||||||  || ||||| |||||| ||  ||| ||||    
T  377572 atatggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattgttcatgaaccgtcttataagttctttagttttaatg 377671  T
Q  243 ctggaccaaggagttgtttgggtaagga 270  Q
    |||||||||||| ||||||||| |||||    
T  377672 ctggaccaaggacttgtttgggaaagga 377699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 346930 - 346803
Alignment:
Q  143 atatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatg 242  Q
    ||||||||| ||||||||||||| || || |||||||| ||||| ||| ||| |||||| ||  |||||   || ||||||||||| |||  ||  ||||    
T  346930 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtttattagttataatg 346831  T
Q  243 ctggaccaaggagttgtttgggtaagga 270  Q
    ||||||| || | ||||||||| |||||    
T  346830 ctggacctagaacttgtttgggaaagga 346803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 355589 - 355462
Alignment:
Q  143 atatggggagaagattgtttggaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatg 242  Q
    ||||||||| ||||||||||||| || || |||||||| ||||| ||| ||| |||||| ||  |||||   || ||||||||||| |||  ||  ||||    
T  355589 atatggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtttattagttataatg 355490  T
Q  243 ctggaccaaggagttgtttgggtaagga 270  Q
    ||||||| || | ||||||||| |||||    
T  355489 ctggacctagaacttgtttgggaaagga 355462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 29669306 - 29669354
Alignment:
Q  141 aaatatggggagaagattgtttggaatttaaaccagagaggtggatttc 189  Q
    |||||||||| |||||||| |||||||||||||| ||||||||| ||||    
T  29669306 aaatatggggggaagattgcttggaatttaaaccggagaggtggctttc 29669354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University