View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_high_16 (Length: 514)
Name: NF11758_high_16
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 44799308 - 44799803
Alignment:
| Q |
1 |
tctaggacaaatattagtgagatagctcttggaattggtggcataacagcttttgttgtggggtctgcattggcactaatcgttgtgatatgtgttttga |
100 |
Q |
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| T |
44799308 |
tctaggacaa-tattagtgagatagctcttggaattggtggcataacagcttttgttgtggggtctgcattggcactaatcgttgtgatatgtgttttga |
44799406 |
T |
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| Q |
101 |
ttaaaaggaaaaaggggggtgtaattagaaagattagggaaggtcagagtagtaggtttcagacaaataaagttccagtcaagttatcactttcagagat |
200 |
Q |
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| T |
44799407 |
ttaaaaggaaaagggggggtgtaattagaaagattagggaaggtcagagtagtaggtttcagacaaataaagttccagtcaagttatcactttcagagat |
44799506 |
T |
|
| Q |
201 |
tacatcagctacaatgggatttaatagagatagactagttggtgaaggggcatcagcaaaagtttataaagggtcacttccatttggaggtgatgtagct |
300 |
Q |
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| T |
44799507 |
tacatcagctacaatgggatttaatagagatagactagttggtgaaggtgcatcagcaaaagtttataaagggtcacttccatttggaggtgatgtagct |
44799606 |
T |
|
| Q |
301 |
gtcaagagattcgaaaaaatcgatgaattggaccgcttacacaatccttttgcaaccgagttcgctacaatggtaggttgcttgcggcacaagaatctgg |
400 |
Q |
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| T |
44799607 |
gtcaagagattcgaaaaaatcgatgaattggatcgcttacacaatccttttgcaaccgagttcgctacaatggtaggttgcttgcggcacaagaatctgg |
44799706 |
T |
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| Q |
401 |
ttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttgataaagttctgcataggaattt |
497 |
Q |
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| T |
44799707 |
ttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttgataaagttctgcataggaattt |
44799803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 411
Target Start/End: Complemental strand, 8349694 - 8349624
Alignment:
| Q |
341 |
acaatccttttgcaaccgagttcgctacaatggtaggttgcttgcggcacaagaatctggttcagcttaaa |
411 |
Q |
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| T |
8349694 |
acaatccgttcgcaaccgagtttgcttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
8349624 |
T |
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