View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11758_high_17 (Length: 489)
Name: NF11758_high_17
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 44743474 - 44743942
Alignment:
| Q |
1 |
tgattcaaaccaaatgatgacttggcaaaatgcagcaggccctggaccaagagaagaaaatatcggcattaacaatttttctgtcaagccttaattcaat |
100 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44743474 |
tgatccaaaccaaatgatgacttggcaaagtgcagcaggccctggaccaagagaagaaaatatcggcattaacaatttttctgtcaacccttaattcaat |
44743573 |
T |
|
| Q |
101 |
atctaactaaaatgttgttcatggatacttgtttcataagaataaaagagagcttattggaaaataaaatacaaattaacaaaatagattagaatttatt |
200 |
Q |
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| T |
44743574 |
atctaactaaaatgttgttcatggatacttgtttcataagaataaaagagagcttattggaaaataaaatacaaattaactaaatagattagaatttatt |
44743673 |
T |
|
| Q |
201 |
aagttttgactaattatattttagaccgtcaattttgaaaattgtattgcttatattcgaaaccagactagtattttttatatattaatattggcataag |
300 |
Q |
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| T |
44743674 |
aagttttgactaattatattttagaccgtcaattttgaaaattgtattgcttatattcgaaaccagactagtattttttatatattaatattggcataag |
44743773 |
T |
|
| Q |
301 |
gtatgctaagatccaaaatacaacagtatggcagataattccataacagaaactacaaaaccattactaaaaatacatgcaacatataagacttgaacaa |
400 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
44743774 |
gtatgctgagatccaaaatacaacagtatgacagataattccataacagaaactacaaaaccattactaaaaatacaagcaac--atgagacttgaacaa |
44743871 |
T |
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| Q |
401 |
gaatcagttttccaacaattcaactacactgcttcaaaacacaaacacaggggaatactttccactgttct |
471 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44743872 |
gactcagttttccaacaattcaactacactgcttcaaaacacaaacacgggggaatactttccactgttct |
44743942 |
T |
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