View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11758_high_28 (Length: 385)
Name: NF11758_high_28
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 9524218 - 9524576
Alignment:
| Q |
1 |
cttgcaacggcgaaaggtttatcacaatacacgacatcacattcgttagtacttagtttatgtagtttttagttttattgaaaaatgatttcagttacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9524218 |
cttgcaacggcgaaaggtttatcacaatacacgacatcacattcgttag-------tttatgtagtttttagttttattgaaaaatgatttcagttacac |
9524310 |
T |
|
| Q |
101 |
agtatactattatgacgcattcaacaatttgctaattatcattttctttcgatctctattgtttttatattttagggtcggattctgggccctcagtcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9524311 |
agtatactattatgacgcattcaacaatttgctaattatcgttttctttcgatctctattgtttatatattttagggtcggattctgggccctcagtcaa |
9524410 |
T |
|
| Q |
201 |
cacacatgctgcagctggtgctaacaaaaaggcatccaataaaggtcggggaaaagctagtttgctggaaggtgtgcattttatatttgcccgtaaatcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
9524411 |
cacacatgctgcagctggtgctaacaaaaaggcatccaataaaggtcggggaaaagctagtttgcgggaaggtgtgcattttatatttgctcgtaaatcc |
9524510 |
T |
|
| Q |
301 |
caattgacattacattacattctgtattcatccctagtccttttgtcattgacagattatccaaag |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9524511 |
caattgacattacattacattctgtattcatccctagtccttttgtctttgacagattatccaaag |
9524576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 9497307 - 9497406
Alignment:
| Q |
157 |
tattgtttttatattttagggtcggattctgggccctcagtcaacacacatgctgcagctggtgctaacaaaaaggcatccaataaaggtcggggaaaag |
256 |
Q |
| |
|
|||||||| || ||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
9497307 |
tattgtttataaattgtagggtcggattcagggccctcagtcaacacacatgctgcagctagtgctaaccaaaaggcatccaataaagggcgggggaaag |
9497406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 311
Target Start/End: Original strand, 9497428 - 9497473
Alignment:
| Q |
266 |
tggaaggtgtgcattttatatttgcccgtaaatcccaattgacatt |
311 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
9497428 |
tggaaggtgtgcattttatatttggtcataaatcccaattgacatt |
9497473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Original strand, 9497514 - 9497563
Alignment:
| Q |
315 |
ttacattctgtattcatccctagtccttttgtcattgacagattatccaa |
364 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||||||||| ||||| |
|
|
| T |
9497514 |
ttacattctgtatttaatcctagttcttttgtcattgacagattctccaa |
9497563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 23044917 - 23044813
Alignment:
| Q |
134 |
aattatcattttctttcgatctctattgtttttatattttagggtcggattctgggccctcagtcaacacacatgctgcagctggtgctaacaaaaaggc |
233 |
Q |
| |
|
||||||| |||||||||||| || || |||| ||| || |||| ||||||||||||| |||||| || |||||||||||||| | ||||| ||||||| |
|
|
| T |
23044917 |
aattatccttttctttcgatatccatcgtttatatgttgtaggatcggattctgggctctcagtgaaggcacatgctgcagctaggactaaccaaaaggc |
23044818 |
T |
|
| Q |
234 |
atcca |
238 |
Q |
| |
|
|||| |
|
|
| T |
23044817 |
gtcca |
23044813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 23044797 - 23044752
Alignment:
| Q |
269 |
aaggtgtgcattttatatttgcccgtaaatcccaattgacattaca |
314 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
23044797 |
aaggtgtgcatttaatatttgatcctaaatcccaattgacattaca |
23044752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University