View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11758_high_3 (Length: 785)
Name: NF11758_high_3
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_high_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 641; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 15 - 718
Target Start/End: Complemental strand, 41038002 - 41037298
Alignment:
| Q |
15 |
cataggctatacttacttgattcaatgattcactcacccattcccaatcccattccacgatcttggtcgaaattatagagttgacatcgattccaatatg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41038002 |
cataggctatacttacttgattcaatgattcactcacccattcccaatcccattccacgatcttggtcgaaattatagagttgacatcgattccaatatg |
41037903 |
T |
|
| Q |
115 |
gtaaatatagggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagcattctttgaatcaactaatccaaaatattgattt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
41037902 |
gtaaatatagggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagcattctttgaatcaactactccaaaatattgactt |
41037803 |
T |
|
| Q |
215 |
tctgagttgggtggaatcacactgtcttgtggtgcaataaagaagatcaatccatcagttagttgatgtccggggttctctgcgatttcgnnnnnnnn-g |
313 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
41037802 |
tctgaattgggtggaatcacagtgtcttgtggtgcaataaagaagatcaatccatcagttagttgatgtccggggttctctgcgatttcgaaagaaaaag |
41037703 |
T |
|
| Q |
314 |
aagtgacaaagctaccaagattgtcaagggacaaaggtctggataagatacgacctgtacttggtttagttgtatctggaggaagttctaaacgcttagt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41037702 |
aagtgacaaagctaccaagattgtcaagggacaaaggtctggataagatacgacctgtacttggtttagttgtatctggaggaagttctaaacgcttagt |
41037603 |
T |
|
| Q |
414 |
tagtgttatggttccattgattaatacctcagcatccccttggaattttataccaggaggaaatgtatgagcattaggattgaacttggtgaaattgaag |
513 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41037602 |
tagtgttatggttccattgattgatacctcagcatccccttggaattttataccaggaggaaatgtatgagcattaggattgaacttggtgaaattgaag |
41037503 |
T |
|
| Q |
514 |
gaaagtgcttgtactgagtttatatttgttgctagcaagaggaagaaaattatgtatatcaagcctagaacaagttcatgagttggaagatttgtgtgat |
613 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41037502 |
gaaagtgcttgtcctgagtttatatttgttgctagcaagaggaagaaaattgtgtatatcaagcctagaacaagttcatgagttggaagatttgtgtgat |
41037403 |
T |
|
| Q |
614 |
aaaaagccatggtactgtaaagtttgataccaagttatgaatgaggatacagttagttgtcaaacacacacacatatatagaaagagcatgtcttgttaa |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
41037402 |
aaaaagccatggtactgtaaagtttgataccaagttatgaatgaggatacagttagttgtcaaacacacacatatatatagaaagagcatgtcttgttaa |
41037303 |
T |
|
| Q |
714 |
ttatt |
718 |
Q |
| |
|
||||| |
|
|
| T |
41037302 |
ttatt |
41037298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 313 - 718
Target Start/End: Complemental strand, 41043745 - 41043353
Alignment:
| Q |
313 |
gaagtgacaaagctaccaagattgtcaagggacaaaggtctggataagatacgacctgtacttggtttagttgtatctggaggaagttctaaacgcttag |
412 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||| |||| || ||| ||||||||||| |||||| | |||| ||||||| |||||||||||||||| |
|
|
| T |
41043745 |
gaagtggcaaagctagcaagattatcaagggacagaggtgaggttaaaatacgacctgtgcttggtattaatgtacctggaggtagttctaaacgcttag |
41043646 |
T |
|
| Q |
413 |
ttagtgttatggttccattgattaatacctcagcatccccttggaattttataccaggaggaaatgtatgagcattaggattgaacttggtgaaattgaa |
512 |
Q |
| |
|
| |||| |||| ||||||| |||| ||||||||||||||||||| ||||||| | || || ||||| |||| |||||||||||||||||| |
|
|
| T |
41043645 |
tcagtgctatgactccattgcttaacacctcagcatccccttggatggttataccggcagaaac------agcatgaggagggaacttggtgaaattgaa |
41043552 |
T |
|
| Q |
513 |
ggaaagtgcttgtactgagtttatatttgttgctagcaagaggaagaaaattatgtatatcaagcctagaacaagttcatgagttggaagatttgtgtga |
612 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || |||||| || ||||||||| ||||| ||||||||| |||||||||||||||||| || |
|
|
| T |
41043551 |
tgaaagggcttgtactgagtttatatttgttgctagcaaaagaaagaaagttgtgtatatcatgcctaaaacaagttcttgagttggaagatttgtgcga |
41043452 |
T |
|
| Q |
613 |
taaaaagccatggtactgtaaagtttgataccaagttatgaatgaggatacagttagttgtcaaacacacacacatatatagaaagagcatgtcttgtta |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
41043451 |
taaaaagccatggtactgtaaagtttgataccaagttatgaa-------acagttagttgtcaaacacacacatgtatataggaagagcaactcttgtta |
41043359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 339 - 691
Target Start/End: Complemental strand, 41065851 - 41065501
Alignment:
| Q |
339 |
aagggacaaaggtctggataagatacgacctgtacttggtttagttgtatctggaggaagttctaaacgcttagttagtgttatggttccattgattaat |
438 |
Q |
| |
|
|||||||| |||| || |||||||||||| ||||||||| |||||||| | |||||||| | ||||||||| |||| ||| |||||| |||| |
|
|
| T |
41065851 |
aagggacacaggtggggttaagatacgaccagtacttggtatagttgtaccataaggaagtttgatacgcttagtcagtgcgatgaccccattgtttaac |
41065752 |
T |
|
| Q |
439 |
acctcagcatccccttggaattttataccaggaggaaatgtatgagcattaggattgaacttggtgaaattgaaggaaagtgcttgtactgagtttatat |
538 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41065751 |
gtctgagcatccccttggaaggttataccagagggaaacatcagagcattaggagtgaacttggtgaaattgaaggaaagggcttgtactgagtttatat |
41065652 |
T |
|
| Q |
539 |
ttgttgctagcaagaggaagaaaattatgtatatcaagcctagaacaagttcatgagttggaagatttgtgtgataaaaagccatggtactgtaaagttt |
638 |
Q |
| |
|
||||||||||||| || || ||| || ||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
41065651 |
ttgttgctagcaaaagaaaaaaagttgtgtatatcatgcctaaaacaagttcatgagttggaagatttgtgcggtaaaaagccatggtactgtaaagttt |
41065552 |
T |
|
| Q |
639 |
gataccaagttatgaatgaggatacagttagttgtcaaacacacacacatata |
691 |
Q |
| |
|
||||||||||||||| |||| || || ||||||| |||||||||| ||||| |
|
|
| T |
41065551 |
gataccaagttatgagtgag--tattgtaagttgtcgaacacacacatatata |
41065501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 62 - 274
Target Start/End: Complemental strand, 41066145 - 41065933
Alignment:
| Q |
62 |
tcccattccacgatcttggtcgaaattatagagttgacatcgattccaatatggtaaatatagggatcaaaactattgggataaaggtcaaactctacac |
161 |
Q |
| |
|
||||||| |||| ||||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066145 |
tcccatttcacggtcttgagagaaattaaagagttgacatcgattccaatatgtttcgtattgggatcaaaactattgggataaaggtcaaactctacac |
41066046 |
T |
|
| Q |
162 |
caacaaattgattgtaagcattctttgaatcaactaatccaaaatattgattttctgagttgggtggaatcacactgtcttgtggtgcaataaagaagat |
261 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
41066045 |
caacaaattgattgtaagtattttttgaatcaactactccaagatattgactttctgagttgggtggaatcttagtgtcttgtggtgcaataaagaagac |
41065946 |
T |
|
| Q |
262 |
caatccatcagtt |
274 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
41065945 |
caaaccatcagtt |
41065933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 41044038 - 41043785
Alignment:
| Q |
15 |
cataggctatacttacttgattcaatgattcactcacccattcccaatcccattccacgatcttggtcgaaattatagagttgacatcgattccaatatg |
114 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
41044038 |
cataggctacacttacttgagtcaatgatccactcacccattccca------ttccacgatcttgctcgaaattaaagagttgatatcgattccaatatg |
41043945 |
T |
|
| Q |
115 |
gtaaatatagggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagcattctttgaatcaactaatccaaaatattgattt |
214 |
Q |
| |
|
| |||| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||| | | || |
|
|
| T |
41043944 |
tttcatattgggatcaagaatattggtataaaggtcaaactctacaccaacaaattgattgtaagcattttctatatcaactactccaaaacgtgcactt |
41043845 |
T |
|
| Q |
215 |
tctgagttgggtggaatcacactgtcttgtggtgcaataaagaagatcaatccatcagtt |
274 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
41043844 |
gttgagtggggtggaatcacagtgtcttgtggtgcaataaaaaagatcactccatcagtt |
41043785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 41074145 - 41074111
Alignment:
| Q |
149 |
tcaaactctacaccaacaaattgattgtaagcatt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41074145 |
tcaaactctacaccaacaaattgattgtaagcatt |
41074111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 3e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 339 - 691
Target Start/End: Original strand, 8496283 - 8496633
Alignment:
| Q |
339 |
aagggacaaaggtctggataagatacgacctgtacttggtttagttgtatctggaggaagttctaaacgcttagttagtgttatggttccattgattaat |
438 |
Q |
| |
|
|||||||| |||| || |||||||||||| ||||||||| |||||||| | |||||||| | ||||||||| |||| ||| |||||| |||| |
|
|
| T |
8496283 |
aagggacacaggtggggttaagatacgaccagtacttggtatagttgtaccataaggaagtttgatacgcttagtcagtgcgatgaccccattgtttaac |
8496382 |
T |
|
| Q |
439 |
acctcagcatccccttggaattttataccaggaggaaatgtatgagcattaggattgaacttggtgaaattgaaggaaagtgcttgtactgagtttatat |
538 |
Q |
| |
|
|| |||||| |||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8496383 |
gtcttagcatctccttggaaggttataccagaaggaaatgtctgagcattaggagtgaacttggtgaaattgaaggaaagggcttgtactgagtttatat |
8496482 |
T |
|
| Q |
539 |
ttgttgctagcaagaggaagaaaattatgtatatcaagcctagaacaagttcatgagttggaagatttgtgtgataaaaagccatggtactgtaaagttt |
638 |
Q |
| |
|
||||||||||||| || |||||| || ||||||||| ||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
8496483 |
ttgttgctagcaaaagaaagaaagttgtgtatatcatgcctaaaacaagttcttgagttggaagatttgtgcggtaaaaagccatggtactgtaaaattt |
8496582 |
T |
|
| Q |
639 |
gataccaagttatgaatgaggatacagttagttgtcaaacacacacacatata |
691 |
Q |
| |
|
||||||||||||||| |||| || || ||||| |||||||||||| ||||| |
|
|
| T |
8496583 |
gataccaagttatgagtgag--tattgtaagttgacaaacacacacatatata |
8496633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 83 - 270
Target Start/End: Original strand, 8496011 - 8496198
Alignment:
| Q |
83 |
gaaattatagagttgacatcgattccaatatggtaaatatagggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagcat |
182 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8496011 |
gaaattaaagagttgacatcgattccaatatgtctcgtattgggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagaac |
8496110 |
T |
|
| Q |
183 |
tctttgaatcaactaatccaaaatattgattttctgagttgggtggaatcacactgtcttgtggtgcaataaagaagatcaatccatc |
270 |
Q |
| |
|
| ||||||||||||| ||||| || | || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
8496111 |
tttttgaatcaactactccaagatgtagactttctgagttgggtggaatcacagtgtcttgtggtgcaataaagaagaccaatccatc |
8496198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 21482904 - 21482869
Alignment:
| Q |
148 |
gtcaaactctacaccaacaaattgattgtaagcatt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21482904 |
gtcaaactctacaccaacaaattgattgaaagcatt |
21482869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 21493056 - 21493021
Alignment:
| Q |
148 |
gtcaaactctacaccaacaaattgattgtaagcatt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21493056 |
gtcaaactctacaccaacaaattgattgaaagcatt |
21493021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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