View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_high_4 (Length: 780)

Name: NF11758_high_4
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_high_4
NF11758_high_4
[»] chr4 (4 HSPs)
chr4 (19-765)||(4328063-4328812)
chr4 (476-521)||(13483083-13483128)
chr4 (489-523)||(3606982-3607016)
chr4 (490-535)||(32662837-32662882)
[»] scaffold0074 (1 HSPs)
scaffold0074 (490-535)||(45707-45752)
[»] chr8 (2 HSPs)
chr8 (494-530)||(40872963-40872999)
chr8 (489-534)||(26688947-26688992)
[»] chr5 (2 HSPs)
chr5 (490-528)||(17877115-17877153)
chr5 (490-535)||(12669555-12669600)
[»] chr3 (1 HSPs)
chr3 (489-535)||(36720463-36720509)
[»] chr1 (1 HSPs)
chr1 (491-529)||(10334044-10334082)
[»] chr7 (1 HSPs)
chr7 (489-534)||(48983682-48983727)


Alignment Details
Target: chr4 (Bit Score: 691; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 19 - 765
Target Start/End: Original strand, 4328063 - 4328812
Alignment:
Q  19 cttcaatctccattactttgttttcactttcctcaaattctactctgtctagttcatttgattcctcaaatgctagcatctcactctctatttttgctgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328063 cttcaatctccattactttgttttcactttcctcaaattctactctgtctagttcatttgattcctcaaatgctagcatctcactctctatttttgctgt 4328162  T
Q  119 tatctattaatcacaaatgaatgtaaaagggtcattattgaagtaattttcaagcaacttttgtacaagtactgtttttagcaggcatgtttgcgtttat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4328163 tatctattaatcacaaatgaatgtaaaagggtcattattgaagtaattttcaagcaacttttgtacaagtactgtttttagcaggcatgtttgcgtttgt 4328262  T
Q  219 atattctatacttcatatgataagtgtacataataagcatataatctaagaaatcaatcaataattaaacaattaaaatagaattaaaagtacattaaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328263 atattctatacttcatatgataagtgtacataataagcatataatctaagaaatcaatcaataattaaacaattaaaatagaattaaaagtacattaaca 4328362  T
Q  319 tatcttatnnnnnnntatggaaggtaagagaatacattatcaatttagtctctatagtatcgctctcttcaattttagtttctaaagtatcactatcttc 418  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4328363 tatcttataaaaaaatatggaaggtaagagaatacattatcaatttagtctctatagtatcgctctcttcaattttagtttctaaagtatcactatcttc 4328462  T
Q  419 aaatttagtctctatagtatttaaaaataatgagtatgcttctcctaaaggtcttgagtttgactctcccagtgtcaatttaggtgggctagtttaactt 518  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4328463 aactttagtctctatagtatttaaaaataatgagtatgcttctcctaaaggtcttgagtttgactctcccagtatcaatttaggtgggctagtttaactt 4328562  T
Q  519 cttaacaaaaataaaaataacgattatctctaaattatataaaattcgtcactttagactttgttgtcaagatgctaagaactaacacaaaggattttca 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4328563 cttaacaaaaataaaaataacgattatctctaaattatataaaattcgtcactttagactttgttgtcaagatgctaagaactaatacaaaggattttca 4328662  T
Q  619 tatactcaccgtaattagagcctttggcactacaatgagtccaccatggcatcc---ccgctacttcggtcatttggaccgactatgagactaattctca 715  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  4328663 tatactcaccgtaattagagcctttggcaccacaatgagtccaccatggcatccccgccgctacttcggtcatttggaccgactatgagactaattctca 4328762  T
Q  716 attcgactgattaaacaatattttatccttccaagggttactcccctatg 765  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4328763 attcgactgattaaacaatattttattcttccaagggttactcccctatg 4328812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 521
Target Start/End: Original strand, 13483083 - 13483128
Alignment:
Q  476 gtttgactctcccagtgtcaatttaggtgggctagtttaacttctt 521  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||||    
T  13483083 gtttgattctcccattgtcaatttaggtgggctaatttaacttctt 13483128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 523
Target Start/End: Complemental strand, 3607016 - 3606982
Alignment:
Q  489 agtgtcaatttaggtgggctagtttaacttcttaa 523  Q
    ||||||||||||||||||||| |||||||||||||    
T  3607016 agtgtcaatttaggtgggctaatttaacttcttaa 3606982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 32662837 - 32662882
Alignment:
Q  490 gtgtcaatttaggtgggctagtttaacttcttaacaaaaataaaaa 535  Q
    ||||||||||| |||||||| ||||||||||||| ||||| |||||    
T  32662837 gtgtcaatttaagtgggctaatttaacttcttaaaaaaaaaaaaaa 32662882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 45752 - 45707
Alignment:
Q  490 gtgtcaatttaggtgggctagtttaacttcttaacaaaaataaaaa 535  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||    
T  45752 gtgtcaatttaggtgggttagtttaacttcttaaaaaaaaaaaaaa 45707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 494 - 530
Target Start/End: Original strand, 40872963 - 40872999
Alignment:
Q  494 caatttaggtgggctagtttaacttcttaacaaaaat 530  Q
    |||||||||||||||||||||||||||||| ||||||    
T  40872963 caatttaggtgggctagtttaacttcttaaaaaaaat 40872999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 534
Target Start/End: Original strand, 26688947 - 26688992
Alignment:
Q  489 agtgtcaatttaggtgggctagtttaacttcttaacaaaaataaaa 534  Q
    ||||||||||| |||||||||||||| |||||||| ||||| ||||    
T  26688947 agtgtcaatttgggtgggctagtttagcttcttaaaaaaaaaaaaa 26688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 490 - 528
Target Start/End: Complemental strand, 17877153 - 17877115
Alignment:
Q  490 gtgtcaatttaggtgggctagtttaacttcttaacaaaa 528  Q
    |||||||||||||||||||| ||||||||||||| ||||    
T  17877153 gtgtcaatttaggtgggctaatttaacttcttaaaaaaa 17877115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 535
Target Start/End: Original strand, 12669555 - 12669600
Alignment:
Q  490 gtgtcaatttaggtgggctagtttaacttcttaacaaaaataaaaa 535  Q
    |||||||||||||||||||||||||  ||||||| ||||| |||||    
T  12669555 gtgtcaatttaggtgggctagtttagtttcttaaaaaaaaaaaaaa 12669600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 535
Target Start/End: Original strand, 36720463 - 36720509
Alignment:
Q  489 agtgtcaatttaggtgggctagtttaacttcttaacaaaaataaaaa 535  Q
    |||||||||||||||||||| ||||| |||||||| ||||| |||||    
T  36720463 agtgtcaatttaggtgggctggtttagcttcttaaaaaaaaaaaaaa 36720509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 529
Target Start/End: Complemental strand, 10334082 - 10334044
Alignment:
Q  491 tgtcaatttaggtgggctagtttaacttcttaacaaaaa 529  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  10334082 tgtcaatttaggtgggctaatttaacttcttaaaaaaaa 10334044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 534
Target Start/End: Complemental strand, 48983727 - 48983682
Alignment:
Q  489 agtgtcaatttaggtgggctagtttaacttcttaacaaaaataaaa 534  Q
    ||||||||||| ||||||||| ||||||||||||| ||||| ||||    
T  48983727 agtgtcaatttgggtgggctaatttaacttcttaaaaaaaaaaaaa 48983682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University