View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_low_1 (Length: 1124)

Name: NF11758_low_1
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_low_1
NF11758_low_1
[»] chr2 (8 HSPs)
chr2 (206-431)||(44911826-44912049)
chr2 (17-169)||(44911676-44911828)
chr2 (16-179)||(3768993-3769156)
chr2 (742-923)||(44912046-44912229)
chr2 (721-861)||(44918034-44918173)
chr2 (976-1100)||(44948864-44948988)
chr2 (178-218)||(3768575-3768615)
chr2 (423-461)||(23244852-23244890)
[»] chr1 (3 HSPs)
chr1 (16-179)||(3928561-3928724)
chr1 (258-350)||(3928981-3929073)
chr1 (365-461)||(3929116-3929211)
[»] chr4 (3 HSPs)
chr4 (19-179)||(6353914-6354074)
chr4 (178-353)||(6354454-6354636)
chr4 (352-457)||(6354668-6354772)
[»] chr6 (1 HSPs)
chr6 (21-105)||(30372845-30372929)
[»] chr5 (1 HSPs)
chr5 (423-461)||(6437366-6437404)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 206 - 431
Target Start/End: Original strand, 44911826 - 44912049
Alignment:
Q  206 tggttgtttctttgatagtgggattgtgtaaagagtggcaacaaacaatcatatggtacattataaaaataaaactattatcccaacaaaatagtcttgc 305  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| |||||    
T  44911826 tggttgtttctttgatagtgggattgtgtaaagagcggcaacaaacaatcat--ggtacattataaaaataaaactattataccaacaaaatagccttgc 44911923  T
Q  306 caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttaga 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  44911924 caaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagcaaagggatgaaacgaaaggctgaaaagattacgctgtggttataaaagttaga 44912023  T
Q  406 gatcatagtaaatatttgatccaatg 431  Q
    |||||||||||| |||||||||||||    
T  44912024 gatcatagtaaagatttgatccaatg 44912049  T

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Target: chr2; HSP #2
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 44911676 - 44911828
Alignment:
Q  17 acagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggtt 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44911676 acagagggtcaggaatttaactaccataaaacatccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattaggtt 44911775  T
Q  117 catcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatgg 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44911776 catcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatgg 44911828  T

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Target: chr2; HSP #3
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 3769156 - 3768993
Alignment:
Q  16 cacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggt 115  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  3769156 cacagggggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcatttggt 3769057  T
Q  116 tcatcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa 179  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3769056 tcatcgtcatcacagcaacaccaacccctcttgtttcataccttcttcccatggattgtgtcaa 3768993  T

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Target: chr2; HSP #4
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 742 - 923
Target Start/End: Original strand, 44912046 - 44912229
Alignment:
Q  742 aatgttcttctcatataagttatttctacataaaattggagacagttnnnnnnnn--ggcaaattaaaagagaatgaactttgaatattaaaattgataa 839  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||||||||||||||||||||||||||    
T  44912046 aatgttcttctcatataagttatttctacataaaattggagacaattaaaaaaaaaaggcaaattaaaagagaatgaactttgaatattaaaattgataa 44912145  T
Q  840 gccaactgtattcctatttttcttagcaaataacgaagtactacacaaaataactttgaagcaataatattcataattatcaaa 923  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44912146 gccaactgtattcctatttttctaagcaaataacgaagtactacacaaaataactttgaagcaataatattcataatcatcaaa 44912229  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 721 - 861
Target Start/End: Original strand, 44918034 - 44918173
Alignment:
Q  721 atatgttgcttattcaattataatgttcttctcatataagttatttctacataaaattggagacagttnnnnnnnnggcaaattaaaagagaatgaactt 820  Q
    |||||||||| |||||||||| ||||||| ||||||| || |||||| ||||||||||||||| ||||        ||||||||||||||||||||||||    
T  44918034 atatgttgctcattcaattatcatgttctcctcatatgagatatttcaacataaaattggagatagttcaataaaaggcaaattaaaagagaatgaactt 44918133  T
Q  821 tgaatattaaaattgataagccaactgtattcctatttttc 861  Q
    |||||| | ||||||||||| ||||  ||||||||||||||    
T  44918134 tgaata-tgaaattgataaggcaacaatattcctatttttc 44918173  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 976 - 1100
Target Start/End: Original strand, 44948864 - 44948988
Alignment:
Q  976 tttttcctttagacataaagtcaagaatagtgatttgaagattgtannnnnnnnnnnnnnnnnngcccgcatagaaatcttgacttagaaatcgaatttc 1075  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |                  ||| |||||||||||| ||||||||||||||||||     
T  44948864 tttttcctttagacataaagtctagaatagtgatttgaagattgaattttttttgtgattttttgccggcatagaaatctcgacttagaaatcgaatttt 44948963  T
Q  1076 aaaatgataatttgcatagacatat 1100  Q
    |||||||||||||||||||||||||    
T  44948964 aaaatgataatttgcatagacatat 44948988  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 3768615 - 3768575
Alignment:
Q  178 aacaagcatttgcaacaaaactctttgctggttgtttcttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3768615 aacaagcatttgcaacaaaactctttgctggttgtttcttt 3768575  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 423 - 461
Target Start/End: Complemental strand, 23244890 - 23244852
Alignment:
Q  423 gatccaatggtcaccatttgatcctctcatcctctcatt 461  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  23244890 gatccaatggtcaccatttgatcatctcaccctctcatt 23244852  T

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Target: chr1 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 3928561 - 3928724
Alignment:
Q  16 cacagagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggt 115  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||    
T  3928561 cacagagggtcaggaatttaactaccatagaaccttcaatttaccgttcatgtcattcatctatcttccatcttctcgtttctattaattttcattcggt 3928660  T
Q  116 tcatcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  3928661 tcatcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatagattgtgtcaa 3928724  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 3928981 - 3929073
Alignment:
Q  258 atggtacattataaaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgca 350  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3928981 atggtacattataaaaataaaactattatcccaacaaaatagccttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgca 3929073  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 365 - 461
Target Start/End: Original strand, 3929116 - 3929211
Alignment:
Q  365 tgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctcatt 461  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  3929116 tgaaagggtgaaaagattacgctgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgatcctctcatcctctcatt 3929211  T

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Target: chr4 (Bit Score: 133; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 6353914 - 6354074
Alignment:
Q  19 agagggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattctcattaggttca 118  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  6353914 agagggtcatgaattaaactaccatagaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaattttcattcggttca 6354013  T
Q  119 tcgtcatcacaacaacaccaacccctcttgtttcataccttcttcccatggattgtctcaa 179  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  6354014 tcgtcatcacaacaacaccaacccatcttgtttcataccttcttcccatggattgtgtcaa 6354074  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 178 - 353
Target Start/End: Original strand, 6354454 - 6354636
Alignment:
Q  178 aacaagcatttgcaacaaaactctttgctggttgtttcttt-gatagtggg-attgtgtaaagagtggcaacaaacaatcat-----atggtacattata 270  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||     ||  || ||||||    
T  6354454 aacaagcatttgcaacaaaactctttgctggttgtttcttttgatagtggggattgtgtaaagagcggcaacaaacaatcatggtacattataaattata 6354553  T
Q  271 aaaataaaactattatcccaacaaaatagtcttgccaaagaatttggaaactcaaatttgaaacaagaaaagaaattgcagca 353  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6354554 aaaataaaattattatcccaacaaaatagtcttgccaaagaatttggaaagtcaaatttgaaacaagaaaagaaattgcagca 6354636  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 352 - 457
Target Start/End: Original strand, 6354668 - 6354772
Alignment:
Q  352 caaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctca 451  Q
    ||||||||||||  ||||||||||||| ||||   ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  6354668 caaagggatgaaacgaaaggctgaaaatattacaatgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgattctctca 6354766  T
Q  452 tcctct 457  Q
    ||||||    
T  6354767 tcctct 6354772  T

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Target: chr6 (Bit Score: 73; Significance: 9e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 30372929 - 30372845
Alignment:
Q  21 agggtcaggaatttaactaccataaaacctccaatttaccgttcatgccattcatctatcttccatcttctcgtttctattaatt 105  Q
    |||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30372929 agggtcaggaatttaactaccatagatcctccaatttaccgttcatgtcattcatctatcttccatcttctcgtttctattaatt 30372845  T

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Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 423 - 461
Target Start/End: Original strand, 6437366 - 6437404
Alignment:
Q  423 gatccaatggtcaccatttgatcctctcatcctctcatt 461  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  6437366 gatccaatggtcaccatttgatcatctcaccctctcatt 6437404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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