View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_low_11 (Length: 631)

Name: NF11758_low_11
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_low_11
NF11758_low_11
[»] chr4 (6 HSPs)
chr4 (8-631)||(53591706-53592321)
chr4 (148-201)||(12583233-12583286)
chr4 (148-201)||(45892681-45892734)
chr4 (148-201)||(48665920-48665973)
chr4 (154-201)||(21801430-21801477)
chr4 (143-201)||(9733980-9734037)
[»] chr3 (4 HSPs)
chr3 (45-594)||(23779594-23780117)
chr3 (41-364)||(4858308-4858627)
chr3 (580-631)||(23779515-23779566)
chr3 (148-190)||(5999913-5999955)
[»] chr5 (6 HSPs)
chr5 (41-363)||(1953927-1954246)
chr5 (115-227)||(35247442-35247556)
chr5 (149-198)||(32538039-32538088)
chr5 (410-455)||(1953853-1953898)
chr5 (145-198)||(15195762-15195815)
chr5 (145-197)||(32653623-32653675)
[»] chr1 (3 HSPs)
chr1 (24-361)||(27308856-27309190)
chr1 (145-188)||(25078738-25078781)
chr1 (148-197)||(50590189-50590238)
[»] chr2 (7 HSPs)
chr2 (148-271)||(13135740-13135862)
chr2 (155-198)||(31266907-31266950)
chr2 (8-72)||(13135599-13135663)
chr2 (148-200)||(42236700-42236752)
chr2 (143-177)||(26063131-26063165)
chr2 (143-176)||(26068870-26068903)
chr2 (143-192)||(29829773-29829822)
[»] chr6 (3 HSPs)
chr6 (148-201)||(23661390-23661443)
chr6 (117-226)||(20490025-20490136)
chr6 (148-200)||(1445762-1445814)
[»] scaffold0002 (1 HSPs)
scaffold0002 (115-223)||(346996-347106)
[»] chr7 (4 HSPs)
chr7 (115-221)||(32864655-32864763)
chr7 (148-201)||(12119997-12120050)
chr7 (151-201)||(26470343-26470393)
chr7 (151-201)||(26546783-26546833)
[»] scaffold0527 (2 HSPs)
scaffold0527 (148-201)||(3321-3374)
scaffold0527 (148-201)||(11384-11437)
[»] chr8 (1 HSPs)
chr8 (147-192)||(10261336-10261381)


Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 631
Target Start/End: Original strand, 53591706 - 53592321
Alignment:
Q  8 gagcagagagtcacaaaggtcttgaaaattcaatcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaag 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||| |||||||    
T  53591706 gagcacagagtcacaaaggtcttgaaaattcaatcgtagttcagatcgagggacgaacaaacgacatgaatgtaaagcagtccattgacgacacataaag 53591805  T
Q  108 cgatcgtagcagataaagttctgaaggtacgacatcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaaca 207  Q
    | | ||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  53591806 caaccgtagtagataaagtcctgaaggtacgacatcaataactatcgtcaacacggagcgtctacgcacctagccctttcgagcaacatcaggcgaaaca 53591905  T
Q  208 agtctcgttgaatccagatcgagggatggtatccaaccgaacatcgcacaaatgaacagaaccatataaccaaatcttaaatccggacaaaccagattca 307  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||    
T  53591906 agtctcgttgaatccagatcgagtgatggtatccaaccaaacatcgcacaaatgaatagaaccagataaccaaatcttaaatccgaacaaaccatattca 53592005  T
Q  308 aaatttcaaccaaactagagagtcggaacaaaaccaccatcaatcttcatcttcccggaacnnnnnnnnnnnnnnnnnnnccaaacagacgaaaataaag 407  Q
    ||| ||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||                   ||||| ||||||||||||||    
T  53592006 aaaattcaaccaaaccagagagtcggaacaaaaccaccgccaatcttcatcttctcggaac--------aaaaaaaaaaaccaaagagacgaaaataaag 53592097  T
Q  408 acaacaaaccgtcggataaccaaaagagaagacatctgccagcgaaaccgctgcaacacaaagtcatcacaaacaagacccaagccgacggcggtgcaga 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |||||    
T  53592098 acaacaaaccgtcggataaccaaaagagaagacatctgccagcgaaaccgcagcaacacaaagtcatcacaaacaggacccaagacgacggcggcgcaga 53592197  T
Q  508 ggtcactggagactcagtagctccgatgaagagaaacaacgacccacatatttgagaacagatcgaggggttgtcgcagatccaaaaagcatcaccggcg 607  Q
    |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53592198 ggtcaccggagactcagtagctccgattaggagaaacaacgacccacatatttgagaacagatcgaggggttgtcgcagatccaaaaagcatcaccgacg 53592297  T
Q  608 agagcacagacggccccagctacc 631  Q
    |||||||||||||| || ||||||    
T  53592298 agagcacagacggcgccggctacc 53592321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 12583233 - 12583286
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  12583233 actaccgtcaacacggagcatctacacacctagccctttcgagcaacattagga 12583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 45892681 - 45892734
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  45892681 actaccgtcaacacggagcatctaggcacctagcccttttgagcaacatcagga 45892734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 48665973 - 48665920
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  48665973 actaccgtcaacacggagcatctacgcacctagctcttttgagcaacatcagga 48665920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 21801477 - 21801430
Alignment:
Q  154 gtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||    
T  21801477 gtcaacacggagcatctacgcacctagctcattcgagcaacatcagga 21801430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 9734037 - 9733980
Alignment:
Q  143 caacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    ||||| |||||||||||||||||| |||||||||||  ||||||||||| |||||||||    
T  9734037 caacagctaccgtcaacacggagcgtctacgcacctaaccctttcgagc-acatcagga 9733980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 45 - 594
Target Start/End: Complemental strand, 23780117 - 23779594
Alignment:
Q  45 agttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataaagttctgaaggtacgacatca 144  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||  ||||||||||||||||    
T  23780117 agttcagatcgagggatgaacaaacgacatgaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaagtcatgaaggtacgacatca 23780018  T
Q  145 acaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatc-cagatcgagggatggtatccaa 243  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||| ||    
T  23780017 acaactaccgtcaacacggagcgtctacgcacctaaccctttcgagcaacatcaggcgaaacaagtcttgttgaatcttagatcgagggatggtatctaa 23779918  T
Q  244 ccgaacatcgcacaaatgaacagaaccatataaccaaatctt-aaatccggacaaaccagattcaaaatttcaaccaaactagagagtcggaacaaaacc 342  Q
    || |||||| |||||||||||||||||  | ||||||||||| ||||||||||||| |||| |||||| ||||||||||| ||||  |||||||  ||||    
T  23779917 ccaaacatctcacaaatgaacagaacc--agaaccaaatcttaaaatccggacaaatcagactcaaaaattcaaccaaaccagaggttcggaacggaacc 23779820  T
Q  343 accatcaatcttcatcttcccggaacnnnnnnnnnnnnnnnnnnnccaaacagacgaaaataaagacaacaaaccgtcggataaccaaaagagaagacat 442  Q
    |||| |||||||||||||||||||||                    |||| | |||||||||||||| |||||| |||||||||||||||||||||| ||    
T  23779819 accaccaatcttcatcttcccggaacaaaataaaaccaaatga---caaa-aaacgaaaataaagactacaaactgtcggataaccaaaagagaagatat 23779724  T
Q  443 ctgccagcgaaaccgctgcaacacaaagtcatcacaaacaagacccaagccgacggcggtgcagaggtcactggagactcagtagctccgatgaagagaa 542  Q
    |||||||||||||||| ||||||||        ||||||| |||||||| ||||||||| ||||||||||| ||| |||||||||                   
T  23779723 ctgccagcgaaaccgcagcaacaca-------gacaaacatgacccaagtcgacggcggcgcagaggtcaccggaaactcagtag--------------- 23779646  T
Q  543 acaacgacccacatatttgagaacagatcgaggggttgtcgcagatccaaaa 594  Q
    |||||| || ||  ||||||||||||||||||||||||||||||||||||||    
T  23779645 acaacgtcctacgaatttgagaacagatcgaggggttgtcgcagatccaaaa 23779594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 41 - 364
Target Start/End: Original strand, 4858308 - 4858627
Alignment:
Q  41 tcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataaagttctgaaggtacgac 140  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||  ||||||||||| | ||||||||||||||| ||| |||||||||    
T  4858308 tcgtagttcagttcgagggatgaacaaacgacataaatgtaaagcagtccactgacaacgcataaagcaaccgtagcagataaagtcctgcaggtacgac 4858407  T
Q  141 atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatccagatcgagggatggtatc 240  Q
    ||||||||||| ||||||| | |||| ||||||||| | ||||||||| || | |||||| ||||||||||| |||||||||||||||||||||||||||    
T  4858408 atcaacaactatcgtcaac-cagagcgtctacgcacttagccctttcgtgc-atatcaggcgaaacaagtcttgttgaatccagatcgagggatggtatc 4858505  T
Q  241 caaccgaacatcgcacaaatgaacagaaccatataaccaaatcttaaatccggacaaaccagattcaaaatttcaaccaaactagagagtcggaacaaaa 340  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||| ||||  || || | ||| || |    
T  4858506 caaccaaacatcgcacaaatgaacagaacc--ataaccaaatcttaaatccagacaaaccaaattcaaaatttcaactaaaccggatagccagaataaga 4858603  T
Q  341 ccaccatcaatcttcatcttcccg 364  Q
    |||||| |||||||||||||||||    
T  4858604 ccaccaccaatcttcatcttcccg 4858627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 580 - 631
Target Start/End: Complemental strand, 23779566 - 23779515
Alignment:
Q  580 gtcgcagatccaaaaagcatcaccggcgagagcacagacggccccagctacc 631  Q
    ||||||||||||||||||||||||| |||||||||| ||||| || ||||||    
T  23779566 gtcgcagatccaaaaagcatcaccgacgagagcacatacggcgccggctacc 23779515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 5999913 - 5999955
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgag 190  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  5999913 actaccgtcaacacagagcatctacgcacctagccctttcgag 5999955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 363
Target Start/End: Complemental strand, 1954246 - 1953927
Alignment:
Q  41 tcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataaagttctgaaggtacgac 140  Q
    |||||||| |||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||| | ||||||||||||| |  |||||||||| |    
T  1954246 tcgtagtttagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaattcatgaaggtacggc 1954147  T
Q  141 atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatccagatcgagggatggtatc 240  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  1954146 atcaacaactaccgtcaacacagagcgtctacgcacctagccctttcgagcaacattaggagaaacaagtcttgttgaatgcagatcgagggatggtatc 1954047  T
Q  241 caaccgaacatcgcacaaatgaacagaaccatataaccaaatcttaaatccggacaaaccagattcaaaatttcaaccaaactagagagtcggaacaaaa 340  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || | |||||| |    
T  1954046 caacc-aacatcgcacaaatgaacagaacc--agaaccaaatcttaaatccggacaaaccagattcaaaatttaaactaaaccagatagcctgaacaaga 1953950  T
Q  341 ccaccatcaatcttcatcttccc 363  Q
    ||||||  |||||||||||||||    
T  1953949 ccaccactaatcttcatcttccc 1953927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 35247556 - 35247442
Alignment:
Q  115 agcagataaagttctgaaggtacgac-atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaa-acaagtct 212  Q
    |||||||| |||||| |||||||||| | | |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| | ||| ||    
T  35247556 agcagatatagttcttaaggtacgacgaacgacaactaccgtcaacacggagcatctacgcacctagctctttcgagcaacctcaggagaacataagact 35247457  T
Q  213 cgttgaatccagatc 227  Q
    |||||||||||||||    
T  35247456 cgttgaatccagatc 35247442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 32538039 - 32538088
Alignment:
Q  149 ctaccgtcaacacggagcatctacgcacctggccctttcgagcaacatca 198  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  32538039 ctaccgtcaacacggagcatctatgcacctagccctttcgagcaacatca 32538088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 1953898 - 1953853
Alignment:
Q  410 aacaaaccgtcggataaccaaaagagaagacatctgccagcgaaac 455  Q
    |||||||||| ||||||| ||||||||||||| | |||||||||||    
T  1953898 aacaaaccgttggataacaaaaagagaagacacccgccagcgaaac 1953853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 15195815 - 15195762
Alignment:
Q  145 acaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatca 198  Q
    |||||||||||||||| |||||  |||||||||| ||| ||||||| |||||||    
T  15195815 acaactaccgtcaacatggagcccctacgcacctagccttttcgagaaacatca 15195762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 32653623 - 32653675
Alignment:
Q  145 acaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatc 197  Q
    |||||| ||||||||||||||  ||||||||||| ||| |||| |||||||||    
T  32653623 acaactgccgtcaacacggagtgtctacgcacctagccatttcaagcaacatc 32653675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 24 - 361
Target Start/End: Original strand, 27308856 - 27309190
Alignment:
Q  24 aggtcttgaaaattcaatcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataa 123  Q
    ||||||||||||| || ||||||||||||||||||||||||| |||||||| || | | | |||||||||  ||| ||||||||| |  | |||| ||||    
T  27308856 aggtcttgaaaatccagtcgtagttcagatcgagggatgaaccaacgacat-aacgaaca-cagtccactattgaggcataaagcaactgcagcatataa 27308953  T
Q  124 agttctgaaggtacgacatcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatcca 223  Q
    |||||||| |||||||| |||||||| | |||||||||||||| || ||||||||  | |||||||| |||||||   |||| |||||| ||||||||||    
T  27308954 agttctgagggtacgacttcaacaaccatcgtcaacacggagcgtcgacgcacctaactctttcgagtaacatcacccgaaaaaagtcttgttgaatcca 27309053  T
Q  224 gatcgagggatggtatccaaccgaacatcgcacaaatgaacagaaccata-taaccaaatcttaaatccggacaaaccagattcaaaatttcaaccaaac 322  Q
    ||||||||||||||||||| |  ||||||||||| ||||||| || || |  ||||||||  || ||||| |||||||| ||||||||||||||| ||||    
T  27309054 gatcgagggatggtatccagcaaaacatcgcacatatgaacaaaatcagagaaaccaaattgtatatccgaacaaaccaaattcaaaatttcaactaaac 27309153  T
Q  323 tagagagtcggaacaaaaccaccatcaatcttcatcttc 361  Q
       |||||| | ||||||||||||  |||||||||||||    
T  27309154 --cagagtcaggacaaaaccaccacaaatcttcatcttc 27309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 25078738 - 25078781
Alignment:
Q  145 acaactaccgtcaacacggagcatctacgcacctggccctttcg 188  Q
    |||||||||||||||||||||| |||||||||||  ||||||||    
T  25078738 acaactaccgtcaacacggagcttctacgcacctaaccctttcg 25078781  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 50590189 - 50590238
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatc 197  Q
    ||||||| |||||||||||||||| |||||   |||||||||||||||||    
T  50590189 actaccgccaacacggagcatctatgcaccaaaccctttcgagcaacatc 50590238  T

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Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 13135740 - 13135862
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatccagatcgagggatggtatccaaccga 247  Q
    ||||||||||||||||||| ||||||||| | || ||||||| ||||||| ||  |||||||||| ||||||||||||||| ||||| | |||||||  |    
T  13135740 actaccgtcaacacggagcttctacgcacatagctctttcgaacaacatccggcaaaacaagtcttgttgaatccagatcgtgggat-gcatccaacgaa 13135838  T
Q  248 acatcgcacaaatgaacagaacca 271  Q
    ||| | ||||||||||||||||||    
T  13135839 acaacacacaaatgaacagaacca 13135862  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 31266950 - 31266907
Alignment:
Q  155 tcaacacggagcatctacgcacctggccctttcgagcaacatca 198  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  31266950 tcaacacggagcatctacgcacctagccctttcgaacaacatca 31266907  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 13135599 - 13135663
Alignment:
Q  8 gagcagagagtcacaaaggtcttgaaaattcaatcgtagttcagatcgagggatgaacgaacgac 72  Q
    ||||| |||||| || | ||||||||| |||||||||||| || |||||||||||||| ||||||    
T  13135599 gagcacagagtcgcataagtcttgaaacttcaatcgtagtccaaatcgagggatgaacaaacgac 13135663  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 42236700 - 42236752
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagg 200  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||| |||||    
T  42236700 actaccgtcaacatggagcatctacgcacctagctctttcgagtaacctcagg 42236752  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 26063131 - 26063165
Alignment:
Q  143 caacaactaccgtcaacacggagcatctacgcacc 177  Q
    |||| ||||||||||||||||||||||||||||||    
T  26063131 caactactaccgtcaacacggagcatctacgcacc 26063165  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 26068870 - 26068903
Alignment:
Q  143 caacaactaccgtcaacacggagcatctacgcac 176  Q
    |||| |||||||||||||||||||||||||||||    
T  26068870 caactactaccgtcaacacggagcatctacgcac 26068903  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 29829822 - 29829773
Alignment:
Q  143 caacaactaccgtcaacacggagcatctacgcacctggccctttcgagca 192  Q
    |||||||||||||||||| ||||| ||||||||||   ||||||||||||    
T  29829822 caacaactaccgtcaacatggagcgtctacgcaccaaaccctttcgagca 29829773  T

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Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 23661443 - 23661390
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23661443 actaccgtcaacacggagcatctacgcacctagccctttcgagcaacatcagga 23661390  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 117 - 226
Target Start/End: Original strand, 20490025 - 20490136
Alignment:
Q  117 cagataaagttctgaaggtacgac-atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaa-acaagtctcg 214  Q
    |||||| |||||| |||||||||| | | | |||||||| ||||| |||| |||||||||||| ||||| ||||| ||||||  ||||| ||||| ||||    
T  20490025 cagatacagttcttaaggtacgacgaacgataactaccggcaacatggagtatctacgcacctagccctatcgagaaacatcttgagaatacaagactcg 20490124  T
Q  215 ttgaatccagat 226  Q
    || |||||||||    
T  20490125 tttaatccagat 20490136  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 1445814 - 1445762
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagg 200  Q
    ||||| |||||||||||||||| |||||||| || |||||||| | |||||||    
T  1445814 actacagtcaacacggagcatcaacgcaccttgcactttcgagaagcatcagg 1445762  T

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Target: scaffold0002 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 346996 - 347106
Alignment:
Q  115 agcagataaagttctgaaggtacgac-atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagg-agaaacaagtct 212  Q
    |||||||| |||||| |||||| ||| | | ||||||||||||||||| |||||||||||||||| || |||||||||||| ||||| | | ||||| ||    
T  346996 agcagatacagttcttaaggtatgacgaacgacaactaccgtcaacacagagcatctacgcacctagctctttcgagcaacctcaggcaaacacaagact 347095  T
Q  213 cgttgaatcca 223  Q
    |||||||||||    
T  347096 cgttgaatcca 347106  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 32864655 - 32864763
Alignment:
Q  115 agcagataaagttctgaaggtacgacat-caacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaa-acaagtct 212  Q
    |||||||| | |||| |||||||||||  | ||||| |||||||||||||||||||||  ||||| || |||||||||||| ||||| ||| ||||| ||    
T  32864655 agcagatacaattcttaaggtacgacaaacgacaaccaccgtcaacacggagcatctatacacctagctctttcgagcaacctcaggcgaacacaagact 32864754  T
Q  213 cgttgaatc 221  Q
    |||||||||    
T  32864755 cgttgaatc 32864763  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 12120050 - 12119997
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    |||||||||||||| || ||||||| ||||| ||||||||||||||||||||||    
T  12120050 actaccgtcaacacagaacatctacacacctagccctttcgagcaacatcagga 12119997  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 26470393 - 26470343
Alignment:
Q  151 accgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  26470393 accgtcaacatggagcatctacgcacctagccctttcgaggaacattagga 26470343  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 26546833 - 26546783
Alignment:
Q  151 accgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  26546833 accgtcaacatggagcatctacgcacctagccctttcgaggaacattagga 26546783  T

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Target: scaffold0527 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 3321 - 3374
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    ||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  3321 actacagtcatcacggagcatctatgcacctagccctttcgagcaacatcagga 3374  T

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Target: scaffold0527; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 11384 - 11437
Alignment:
Q  148 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 201  Q
    ||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  11384 actacagtcatcacggagcatctatgcacctagccctttcgagcaacatcagga 11437  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 10261336 - 10261381
Alignment:
Q  147 aactaccgtcaacacggagcatctacgcacctggccctttcgagca 192  Q
    |||||||||||| ||||||| ||||||||||| |||||||| ||||    
T  10261336 aactaccgtcaatacggagcttctacgcacctagccctttcaagca 10261381  T

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