View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11758_low_15 (Length: 548)
Name: NF11758_low_15
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11758_low_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 44 - 530
Target Start/End: Complemental strand, 9924594 - 9924108
Alignment:
| Q |
44 |
agttctcaagagattgatgagtgactaaaaacacatacgttagatagtctgatataatataaaattttcatgacctaaatcaaattttgtcaactttaat |
143 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9924594 |
agttctcaagagactgatgagtgactaaaaacacattggttagatagtctgatataatataaaattttcatgacctaaatcaaattttaccaactttaat |
9924495 |
T |
|
| Q |
144 |
cggatcagacacatatttaacctaattgaatattggcaggaactatatacaagcatcaaaagggaaaaaagagacataggaactttggcaagaacattgg |
243 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9924494 |
cggatcaaacacatatttaacctaattgaatattggcaggaactatatacaagcatcaaaagggaaaaaagagacataggaactttggcaagaacattgg |
9924395 |
T |
|
| Q |
244 |
tgagtagggcagatatagacatggatgagattaaaagggttttcaaagaaaagtatgagaaggaacttggtgattttatatgtgaaagcattccatgtgg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9924394 |
tgagtagggcagatatagacatggatgagattagaagggttttcaaagaaaagtatgagaaggaacttggtgattttatatgtgaaagcattccatgtgg |
9924295 |
T |
|
| Q |
344 |
ggactatagagactttctagttgccttggctacaaaaacttgcaccccttctaacatctatagcaattagcaacaaaaattgttgagaacaatgtaattc |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9924294 |
ggactatagagactttctagttgccttggctacaaaaacttgcaccccttctaacatctatagcaattagcaacaaaacttgttgagaacaatgtaattc |
9924195 |
T |
|
| Q |
444 |
atattagcttttttgagtttctttatgagttgaataacttttgtagcttaattaattgtatcatatagttatataattgacaatgtt |
530 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9924194 |
atattagcttttttgagtttctttatgagttgaataacttttgtagcttaattaattgtattatatagttatataattgacaatgtt |
9924108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University