View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11758_low_20 (Length: 487)

Name: NF11758_low_20
Description: NF11758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11758_low_20
NF11758_low_20
[»] chr2 (4 HSPs)
chr2 (1-468)||(2356203-2356670)
chr2 (1-85)||(22722133-22722217)
chr2 (1-44)||(23747522-23747565)
chr2 (178-214)||(43586027-43586063)
[»] chr5 (1 HSPs)
chr5 (178-214)||(30080523-30080559)
[»] chr1 (2 HSPs)
chr1 (178-214)||(24462292-24462328)
chr1 (178-207)||(18946056-18946085)
[»] chr7 (1 HSPs)
chr7 (178-214)||(5937443-5937479)
[»] chr6 (2 HSPs)
chr6 (178-214)||(10031571-10031607)
chr6 (178-214)||(19369818-19369854)
[»] chr4 (1 HSPs)
chr4 (178-214)||(28663493-28663529)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 2356203 - 2356670
Alignment:
Q  1 aaagtggagataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccatttgtatctacaataatggcctcattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356203 aaagtggagataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccatttgtatctacaataatggcctcattct 2356302  T
Q  101 aaacaagttaagatcaattcannnnnnncaaaatttgaattacannnnnnnccgacacatgtaattacattgaaataattgaattatgtcattttctcaa 200  Q
    |||||||||||||||||||||       ||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2356303 aaacaagttaagatcaattcatttttttcaaaatttgaattacatttttttccgacacatgtaattaaattgaaataattgaattatgtcattttctcaa 2356402  T
Q  201 aatttgatcagtgtgagtgttgcgtcgtgtccggtgtccgtggaaaagatttcttaactaaaatatgcctagaactaaaagcctgaagtcaagacattat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356403 aatttgatcagtgtgagtgttgcgtcgtgtccggtgtccgtggaaaagatttcttaactaaaatatgcctagaactaaaagcctgaagtcaagacattat 2356502  T
Q  301 tcaactgtgaaatcattactaaagatgaagaatatcatgattcaaagaattaaagcaataggtaacgnnnnnnncaaaatgaaattggaacaaaatttaa 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  2356503 tcaactgtgaaatcattactaaagatgaagaatatcatgattcaaagaattaaagcaataggtaacgaaaaaaacaaaatgaaattggaacaaaatttaa 2356602  T
Q  401 cctacatcgtcgtttttacaatctatactcagaataataagaaaaaatctatgcatcatgcagagatc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356603 cctacatcgtcgtttttacaatctatactcagaataataagaaaaaatctatgcatcatgcagagatc 2356670  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 22722133 - 22722217
Alignment:
Q  1 aaagtggagataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccatttgtatctacaa 85  Q
    ||||| || |||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||| || ||||||    
T  22722133 aaagttgacataaaatcaatgaaagatggacgttgatcctctttccatgcatttctcatcaaacagactccatttatacctacaa 22722217  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 23747565 - 23747522
Alignment:
Q  1 aaagtggagataaaatcaatgaaggaaggatgttgatcctcttt 44  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  23747565 aaagtggagataaaatcaatgaaggatggacgttgatcctcttt 23747522  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 43586027 - 43586063
Alignment:
Q  178 attgaattatgtcattttctcaaaatttgatcagtgt 214  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  43586027 attgaattatgtcattttctcaaaattttatctgtgt 43586063  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 30080523 - 30080559
Alignment:
Q  178 attgaattatgtcattttctcaaaatttgatcagtgt 214  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30080523 attgaattatgtcattttctcaaaattttatcagtgt 30080559  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 24462292 - 24462328
Alignment:
Q  178 attgaattatgtcattttctcaaaatttgatcagtgt 214  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24462292 attgaattatgtcattttttcaaaatttgatcagtgt 24462328  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 18946056 - 18946085
Alignment:
Q  178 attgaattatgtcattttctcaaaatttga 207  Q
    ||||||||||||||||||||||||||||||    
T  18946056 attgaattatgtcattttctcaaaatttga 18946085  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 5937443 - 5937479
Alignment:
Q  178 attgaattatgtcattttctcaaaatttgatcagtgt 214  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  5937443 attgaattatgtcattttctcaaaattttatccgtgt 5937479  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 10031607 - 10031571
Alignment:
Q  178 attgaattatgtcattttctcaaaatttgatcagtgt 214  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  10031607 attgaattatgtcattttctcaaaattttatcggtgt 10031571  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 19369854 - 19369818
Alignment:
Q  178 attgaattatgtcattttctcaaaatttgatcagtgt 214  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  19369854 attgaattatgtcattttctcaaaattttatccgtgt 19369818  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 28663529 - 28663493
Alignment:
Q  178 attgaattatgtcattttctcaaaatttgatcagtgt 214  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  28663529 attgaattatgtcattttctcaaaattttatccgtgt 28663493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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